Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A02
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    28   4.0  
Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U00049-1|AAC47053.2|  288|Caenorhabditis elegans Serpentine rece...    27   9.2  
AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine re...    27   9.2  

>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = -2

Query: 347  TPISFLTCPQAVVP-MKVMDSSIGCLTAATSFVILLLSWSM-KLSPSAAALVIITAARTC 174
            +P+ +L C    +P M+ ++  + CL      ++     +  +  P+AA L   +  R  
Sbjct: 864  SPLDYLPCELHKLPVMEGVEEVVDCLRLRHCEIVRRSQAAEDRWLPNAAFLQ--SFGRII 921

Query: 173  STCVMLIGIMGRMQVQTP 120
             TCV +IGIM  + V+ P
Sbjct: 922  DTCVDVIGIMDNIDVEKP 939


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 275 LTAATSFVILLLSWSMKLSPSAAALVIITAA 183
           +T+ T+F    L W M  +P+ A   IITAA
Sbjct: 451 VTSFTNFFCFFLGWFMCSTPAVADFCIITAA 481


>Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical
           protein W04A4.5 protein.
          Length = 1071

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -1

Query: 291 LVDRLFDRSHLFRDTSAQLVDEIEPVSGRAR 199
           LVDR   R  +FRDTSA  +     VSG AR
Sbjct: 746 LVDRNIQRDEIFRDTSAISLYN-SSVSGAAR 775


>U00049-1|AAC47053.2|  288|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 1 protein.
          Length = 288

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 65  RKKYHKNRIY*L*KGNCIAGFGLASVPLY 151
           RKK+ K R Y +   +C+ GF L +  ++
Sbjct: 51  RKKFRKQRFYTIFLADCVTGFILVNFSIF 79


>AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein99 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 149 IMGRMQVQTPRCSFPFIVNRYGFCDIFSLIIC 54
           I+ +  VQ     +P   N   FC IF LI+C
Sbjct: 51  ILAKSPVQMKSMKWPLFYNHL-FCSIFDLILC 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,431,554
Number of Sequences: 27780
Number of extensions: 202784
Number of successful extensions: 661
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)