Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A01
(182 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 83 3e-17
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 83 3e-17
At3g58220.1 68416.m06491 meprin and TRAF homology domain-contain... 31 0.14
At4g08380.1 68417.m01384 proline-rich extensin-like family prote... 29 0.43
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF... 27 2.3
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 26 3.0
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 26 3.0
At3g62890.1 68416.m07065 pentatricopeptide (PPR) repeat-containi... 26 3.0
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 26 3.0
At1g76420.1 68414.m08883 no apical meristem (NAM) family protein... 26 3.0
At1g62790.1 68414.m07087 protease inhibitor/seed storage/lipid t... 26 3.0
At1g62070.1 68414.m07003 expressed protein 26 3.0
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 26 4.0
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 26 4.0
At1g74800.1 68414.m08666 galactosyltransferase family protein co... 26 4.0
At5g60920.1 68418.m07642 phytochelatin synthetase, putative / CO... 25 5.3
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 25 5.3
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 25 5.3
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 25 5.3
At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1) domain... 25 5.3
At1g78890.1 68414.m09196 expressed protein 25 5.3
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 25 5.3
At1g27120.1 68414.m03305 galactosyltransferase family protein co... 25 5.3
At3g42640.1 68416.m04431 ATPase, plasma membrane-type, putative ... 25 7.0
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ... 25 7.0
At2g19180.1 68415.m02238 expressed protein 22 8.6
At5g62620.1 68418.m07859 galactosyltransferase family protein co... 25 9.3
At5g01420.1 68418.m00055 glutaredoxin family protein 25 9.3
At4g19570.1 68417.m02877 DNAJ heat shock N-terminal domain-conta... 25 9.3
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 25 9.3
At4g00790.1 68417.m00109 expressed protein 25 9.3
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 25 9.3
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 25 9.3
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 25 9.3
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 25 9.3
At1g31750.1 68414.m03895 proline-rich family protein contains pr... 25 9.3
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 83.0 bits (196), Expect = 3e-17
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +3
Query: 69 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNL 179
GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWHRRVN+
Sbjct: 87 GGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNV 123
Score = 46.0 bits (104), Expect = 4e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +2
Query: 2 GHQTSAESWGTGRAVARIPR 61
GHQTSAESWGTGRAV+RIPR
Sbjct: 65 GHQTSAESWGTGRAVSRIPR 84
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 83.0 bits (196), Expect = 3e-17
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +3
Query: 69 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNL 179
GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWHRRVN+
Sbjct: 86 GGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNV 122
Score = 46.0 bits (104), Expect = 4e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +2
Query: 2 GHQTSAESWGTGRAVARIPR 61
GHQTSAESWGTGRAV+RIPR
Sbjct: 64 GHQTSAESWGTGRAVSRIPR 83
>At3g58220.1 68416.m06491 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 487
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 7 SNQRRVLGYRSCCSPYSPLFVVVVPTDLGRVHS 105
S +R V+G+ C P+SPLF V + +GR+ S
Sbjct: 31 SRKRSVVGF-VCAVPHSPLFRVATESSMGRIGS 62
>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 437
Score = 29.1 bits (62), Expect = 0.43
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 124 PPRHMLPNAPCPDLWVPPP 68
PP P PCPD++ PPP
Sbjct: 385 PPYAYSPPPPCPDVYKPPP 403
>At1g35830.1 68414.m04452 VQ motif-containing protein contains
PF05678: VQ motif
Length = 302
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -2
Query: 154 LHGLVGANIRPPRHMLPNAPCPDLWVPPPRTAGNTGYSTTGTPRLGAGLMT 2
++ L+ +I H+LP P P PPP ++ N T + R ++T
Sbjct: 65 VNNLISDDILNQTHLLPPQPPPPPPPPPPSSSRNPRKRTRASRRAPTTVLT 115
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 121 PRHMLPNAPCPDLWVPPP 68
P H LP PCP V PP
Sbjct: 290 PVHKLPKKPCPPKKVDPP 307
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 84 RSGQGAFGNMCRGGRMFAPTK 146
R G+G FG++ RGG M A K
Sbjct: 79 RGGKGGFGSLLRGGGMKAGQK 99
>At3g62890.1 68416.m07065 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 558
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 104 ECTLPRSVGTTTTNSGEYGLQHDRYPKTRRWFD 6
E L R + NSG Y L + Y KT RW +
Sbjct: 390 EGALKRLIELDPMNSGAYVLLSNVYAKTGRWME 422
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 169 RRCQRLHGLVGANIRPPRHMLPNAPCPDLWVPPPRT 62
R CQ+ G V + P H +P L PPP++
Sbjct: 167 RVCQQSLGFVAPMMAQPMHQIPTTIVLSLPPPPPQS 202
>At1g76420.1 68414.m08883 no apical meristem (NAM) family protein
N-term similar to N-term of NAM GB:CAA63101 [Petunia x
hybrida] (apical meristem formation), CUC2 GB:BAA19529
[Arabidopsis thaliana], GRAB2 protein GB:CAA09372
[Triticum sp.]
Length = 334
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 151 HGLVGANIRP-PRHMLPNAPCP 89
+GL+G + P P HML ++PCP
Sbjct: 308 YGLLGFSSSPGPLHMLLDSPCP 329
>At1g62790.1 68414.m07087 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 150
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -2
Query: 100 APCPDLWVPPPRTAGNTGYST-TGTPRLGAGLMT 2
AP P +PPP AGNT G G G+ T
Sbjct: 106 APSPKASLPPPAPAGNTKKDAGAGNKLAGYGVTT 139
>At1g62070.1 68414.m07003 expressed protein
Length = 121
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 124 PPRHMLPNAPCPDLWVPPPRTAGNTG 47
PP LP A P L PP + G+TG
Sbjct: 53 PPLPTLPPAQLPGLPTPPKMSNGDTG 78
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -1
Query: 137 REHTSAAAHVTECTLPRSVGTTTTNSGEYGLQHD-RYP 27
RE C +S GT+TT S YG +D ++P
Sbjct: 124 REENGGCGFFQWCDAVQSSGTSTTTSNSYGNGNDTKFP 161
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 91 PDLWVPPPRTAGNTGYSTTGTPRLGAG 11
P L PP G+ +STT P + AG
Sbjct: 16 PGLMTSPPAFPGSNPFSTTPRPGMSAG 42
>At1g74800.1 68414.m08666 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 672
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = -3
Query: 144 WSARTYVRRGTCYRMH--PAQIC 82
WS + + + +CYRM PAQ C
Sbjct: 257 WSKKPVIEQNSCYRMQWGPAQRC 279
>At5g60920.1 68418.m07642 phytochelatin synthetase, putative / COBRA
cell expansion protein COB, putative similar to
phytochelatin synthetase GI:29570314; similar to
GB:AAK56072; identified in Roudier, et al, Plant Phys.
(2002) 130:538-548 (PMID:12376623); identical to cDNA
putative phytochelatin synthetase GI:3559804; contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 456
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = -2
Query: 148 GLVGANIRPPRHMLPNAPCPDLWVPPPRTAGNTGYSTTGTPRLGAGLMT 2
G +R PR+ P P P + T + TT T R +MT
Sbjct: 167 GTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQAMMT 215
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 165 GASASTAWSARTYVRRGTCYRMHPAQICGYHHHEQRGIR 49
G + T +++ V +G R H ICG H R R
Sbjct: 299 GHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTCR 337
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 133 NIRPPRHMLPNAPCPDLW-VPPPRTAGNTGYSTTGTPRLG 17
++ P P+ P P+ V PPRT G++G RLG
Sbjct: 63 SVPTPSVPTPSVPSPNPTPVTPPRTPGSSGNCPIDALRLG 102
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 136 ANIRPPRHMLPNAPCPDLWVPPPRTAGNTGYSTTGTP 26
A PP++ P A P PPP+ GY G P
Sbjct: 515 AGYPPPQY--PQAGYPPAGYPPPQQGYGQGYPAQGYP 549
>At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 666
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = -3
Query: 129 YVRRGTCYRMHPAQICGYHHHEQRGIRATARPVPQDSALV 10
++ +G Y HP+Q + H+Q+ VPQ +
Sbjct: 484 FLHQGVQYIPHPSQYIPIYSHQQQNYPVYVMSVPQSQQYI 523
>At1g78890.1 68414.m09196 expressed protein
Length = 155
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 109 LPNAPCPDLWVPPPRT 62
LP P WVPPPR+
Sbjct: 79 LPFVPGASFWVPPPRS 94
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 10 NQRRVLGYRSCCSPYSPLFVVVVPTDL 90
N+ YR CCSP + + +P D+
Sbjct: 340 NRNAAKNYRYCCSPTKMIHLSTLPQDV 366
>At1g27120.1 68414.m03305 galactosyltransferase family protein
contains Pfam profile:PF01762 galactosyltransferase
Length = 673
Score = 25.4 bits (53), Expect = 5.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 144 WSARTYVRRGTCYRM 100
WS R + + TCYRM
Sbjct: 252 WSGRPVIEQNTCYRM 266
>At3g42640.1 68416.m04431 ATPase, plasma membrane-type, putative /
proton pump, putative strong similarity to P-type
H+-ATPase from [Lycopersicon esculentum] GI:1621440,
[Solanum tuberosum] GI:435001, SP|Q03194 {Nicotiana
plumbaginifolia}; contains InterPro accession IPR001757:
ATPase, E1-E2 type
Length = 948
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 47 ARIPRCSWWWYPQIWAGCIR*HVP 118
ARI C W W IW I ++P
Sbjct: 813 ARIVGCGWGWAGGIWVYSIITYIP 836
>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
proton pump, putative similar to P-type
H(+)-transporting ATPase from [Phaseolus vulgaris]
GI:758250, [Lycopersicon esculentum] GI:1621440,
SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
tuberosum] GI:435001; contains InterPro accession
IPR001757: ATPase, E1-E2 type
Length = 949
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 47 ARIPRCSWWWYPQIWAGCIR*HVP 118
ARI C W W IW I ++P
Sbjct: 812 ARIKGCGWGWCGVIWIYSIVTYIP 835
>At2g19180.1 68415.m02238 expressed protein
Length = 179
Score = 21.8 bits (44), Expect(2) = 8.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 109 LPNAPCPDLWVPP 71
LP AP WVPP
Sbjct: 80 LPFAPGSSFWVPP 92
Score = 21.4 bits (43), Expect(2) = 8.6
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2
Query: 97 PCPDLWVPPPRTAGNT 50
PC ++PPP + +T
Sbjct: 126 PCSSFFIPPPDGSSST 141
>At5g62620.1 68418.m07859 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 681
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = -3
Query: 144 WSARTYVRRGTCYRMH--PAQIC 82
WS + + + TCYRM AQ C
Sbjct: 262 WSGKPVIEQNTCYRMQWGSAQRC 284
>At5g01420.1 68418.m00055 glutaredoxin family protein
Length = 401
Score = 24.6 bits (51), Expect = 9.3
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 133 NIRPPRHMLPNAPC 92
N+RPP + +P PC
Sbjct: 91 NVRPPVNQIPRVPC 104
>At4g19570.1 68417.m02877 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 558
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 127 RPPRHMLPNAPCPDLWVPPP 68
RP R PN P PD+ +P P
Sbjct: 172 RPKRRPRPNIPEPDIPMPMP 191
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 106 PNAPCPDLW-VPPPRTAGNTGYSTTGTPRLG 17
P+ P P+ V PPRT G++G RLG
Sbjct: 63 PSVPSPNPRPVTPPRTPGSSGNCPIDALRLG 93
>At4g00790.1 68417.m00109 expressed protein
Length = 435
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 162 ASASTAWSARTYVRRGTCYRMHPAQICGYHH 70
A T W A YV + C + H Q+CGY H
Sbjct: 144 AVPETDWDA-DYVSQ-LCEKAHFYQVCGYIH 172
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 124 PPRHMLPNAPCPDLWVPPPRTAGNTGYSTTGTPRLGAGL 8
PPR P CP + P +A N +T PR+ A L
Sbjct: 8 PPRLHSPFIHCPINFTPSSFSARNLRSPSTSYPRIKAEL 46
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 124 PPRHMLPNAPCPDLWVPPPRTAGNTGYSTTGTPRLGA 14
PP H +P P ++ PPP T T P +GA
Sbjct: 620 PPSH----SPPPPVYSPPPPTFSPPPTHNTNQPPMGA 652
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 66 RGGGTHRSGQGAFGNMCRGGRMFAP 140
RGG H+ G+G +G GG P
Sbjct: 85 RGGPPHQGGRGGYGGGRGGGPSSGP 109
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 66 RGGGTHRSGQGAFGNMCRGGRMFAP 140
RGG H+ G+G +G GG P
Sbjct: 85 RGGPPHQGGRGGYGGGRGGGPSSGP 109
>At1g31750.1 68414.m03895 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 176
Score = 24.6 bits (51), Expect = 9.3
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 124 PPRHMLPNAPCPDLWVPPPRTAGNTGYSTTGTPRLGAG 11
PP H P A P PPP GY PR G G
Sbjct: 50 PPPHGYPPAAYP----PPPGAYPPAGYPGPSGPRPGFG 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,036,615
Number of Sequences: 28952
Number of extensions: 99275
Number of successful extensions: 433
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 40
effective length of database: 10,912,480
effective search space used: 218249600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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