Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P23
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.36 
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1)                  29   1.5  
SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    29   1.9  
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)              28   3.4  
SB_9756| Best HMM Match : Cadherin (HMM E-Value=0)                     28   3.4  
SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)                   27   4.5  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   27   5.9  
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_37009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)                   27   7.8  
SB_14565| Best HMM Match : YGGT (HMM E-Value=0.11)                     27   7.8  
SB_31134| Best HMM Match : Kinesin (HMM E-Value=0)                     27   7.8  
SB_6204| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  

>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 158 TRVSLTPLCNNTAVSITSNDSPPFNNAD 241
           T+ S TP+C + A   T+N SP  N++D
Sbjct: 570 TQSSATPMCQSGATDTTNNQSPAVNSSD 597


>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1485

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 139 DRNQNHFVVIDSSSRWYLCHSRTDIKFK 56
           DR+   FV     ++W +CH RTD+  K
Sbjct: 851 DRSVEAFVYTVLGAQWRVCHPRTDVHLK 878


>SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1)
          Length = 317

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 110 DDDKMILITVVLSA-LVTRVSLTPLCNNTAVSITSNDSP 223
           DDD   L  ++  A L    S TPLC + + +I   DSP
Sbjct: 61  DDDPASLANIINEAFLAPMASFTPLCADASPTIPPTDSP 99


>SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 447

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 110 DDDKMILITVVLSALVTRV-SLTPLCNNTAVSITSNDSP 223
           DDD   L  ++  A ++ + S TPLC + + +I   DSP
Sbjct: 111 DDDPASLANIINEAFLSPMASFTPLCADASPTIPPTDSP 149


>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
          Length = 558

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +2

Query: 89  IPSRRRIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITS 211
           +P  RR    +M+++  +   +++R++L+P C+N   S+ S
Sbjct: 375 LPPLRRDYTHQMVVVAPLKVKMISRLTLSPTCSNKPHSLPS 415


>SB_9756| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 608

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 152 LVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQL-YNSVIVSDYKAAVKTTFQLEKECR 328
           + T    +P   +  V IT ND    N+  PV +  Y  V+VS+Y    +T  +L     
Sbjct: 356 IATDNGTSPRSAHARVHITVND---VNDNRPVFEPPYYQVMVSEYAPVGQTILRLTVSDN 412

Query: 329 SDVISSVVN*LLLEGQPN 382
               +S +N  ++ G PN
Sbjct: 413 DTAENSQLNLRVVSGDPN 430


>SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)
          Length = 967

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 139 DRNQNHFVVIDSSSRWYLCHSRTDIK 62
           DR   HF V+     W++ H R  ++
Sbjct: 163 DRRYRHFTVVGXXXXWWVSHERESLR 188


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 104 RIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNAD 241
           +ID+ ++IL+T    A     S   +C ++A + T+N +P   N +
Sbjct: 815 KIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPSVTNGN 860


>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 110 DDDKMILITVVLSALVTRVSL-TPLCNNTAVSITSNDSP 223
           DDD   L  ++  A +  ++  TPLC + + +I   DSP
Sbjct: 290 DDDPASLANIINEAFLAPMAFFTPLCADASPTIPPTDSP 328


>SB_37009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 185 NNTAVSITSNDSPPFNNADPVMQ 253
           N+ AV  T   +PP NN DP+ +
Sbjct: 388 NDLAVLYTQKKNPPMNNRDPLSE 410


>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
          Length = 1178

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 118 VVIDSSSRWYLCHSRTDIKFK 56
           +V+ ++++W +CH R D+  K
Sbjct: 541 IVLPANAQWRVCHPRADVHLK 561


>SB_14565| Best HMM Match : YGGT (HMM E-Value=0.11)
          Length = 357

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 241 VSIIKWRRVIGGNRDCSVVT*RCERNAG 158
           +S++KW    G   DC+VV  R E N G
Sbjct: 1   MSLMKWMLDYGDKSDCNVVVVRKEDNDG 28


>SB_31134| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 727

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 155 VTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIVSDYKAAVKTTFQLEKE 322
           V  V L  LC ++     S D   F+ A   +      I+ D+K  +K    L KE
Sbjct: 608 VNNVDLALLCTHSGSRDNSQDLYTFHEAVSQLNDIEDKIIDDHKCTIKEAKTLLKE 663


>SB_6204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 104 RIDDDKMILITVVLSALVTRVSLTPLCNNTAVS 202
           RI+DD  + I   L+A  T +    LCNN   S
Sbjct: 179 RIEDDGAVAIAEALAAYNTNLIKLVLCNNNIAS 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,468
Number of Sequences: 59808
Number of extensions: 170756
Number of successful extensions: 392
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)