Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P23
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    27   6.9  
Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    26   9.1  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 92  PSRRRIDDDKMILITVVLSALVTRVSLTPLC-NNTAVSITSNDSPPFNNADPVMQLYN 262
           P +      KM    ++   L T  ++  +  +NT V I SND+  +   D V +LYN
Sbjct: 52  PRKSAPKTSKMDHFRIIQHPLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYN 109


>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 131 ITVVLSALVTRVSLTPLCNNTAVSITSNDSP--PFNNADPVMQLYNSVIVSDYKAAVKTT 304
           I + +S L+  +   P    T + +TS  SP  PF  +   M LYN       K+ V   
Sbjct: 3   IPIPISILILLLVFIP--TTTTIDLTSISSPRGPFRTSYVFMTLYNKRTGERSKSCVNYQ 60

Query: 305 FQLEKECRSDVIS 343
             L  +  S++++
Sbjct: 61  QYLRTDTSSNIVA 73


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 131 ITVVLSALVTRVSLTPLCNNTAVSITSNDSP--PFNNADPVMQLYNSVIVSDYKAAVKTT 304
           I + +S L+  +   P    T + +TS  SP  PF  +   M LYN       K+ V   
Sbjct: 3   IPIPISILILLLVFIP--TTTTIDLTSISSPRGPFRTSYVFMTLYNKRTGERSKSCVNYQ 60

Query: 305 FQLEKECRSDVIS 343
             L  +  S++++
Sbjct: 61  QYLRTDTSSNIVA 73


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 131 ITVVLSALVTRVSLTPLCNNTAVSITSNDSP--PFNNADPVMQLYNSVIVSDYKAAVKTT 304
           I + +S L+  +   P    T + +TS  SP  PF  +   M LYN       K+ V   
Sbjct: 3   IPIPISILILLLVFIP--TTTTIDLTSISSPRGPFRTSYVFMTLYNKRTGERSKSCVNYQ 60

Query: 305 FQLEKECRSDVIS 343
             L  +  S++++
Sbjct: 61  QYLRTDTSSNIVA 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,457,398
Number of Sequences: 27780
Number of extensions: 121444
Number of successful extensions: 223
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)