Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P23
         (408 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28930.1 68418.m03578 hypothetical protein various predicted ...    29   0.91 
At4g05470.1 68417.m00829 F-box family protein (FBL21) contains s...    27   4.8  
At4g04700.1 68417.m00690 calcium-dependent protein kinase, putat...    27   6.4  

>At5g28930.1 68418.m03578 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 509

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 239 DPVMQLYNSVIVSDYKAAVKTTFQLEKECRSDV 337
           D V+  YNSV V D ++   T F  EKE + DV
Sbjct: 286 DDVVSFYNSVDVPDGQSCGGTNFNNEKEFQGDV 318


>At4g05470.1 68417.m00829 F-box family protein (FBL21) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 576

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 258 YNCITGSALLNGGESLEVIETAVLLHRGV 172
           Y  +T   ++NG E L ++ET V+ H  +
Sbjct: 143 YEPMTNKGVMNGIEKLPLLETLVIFHSSI 171


>At4g04700.1 68417.m00690 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
           contains protein kinase domain, Pfam:PF00069
          Length = 485

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 284 KAAVKTTFQLEKECRSDVISSVVN*LLLEGQPNVVEY 394
           K  +KT  + ++EC  DV   +     L G+PN+VE+
Sbjct: 57  KTILKTKLK-DEECEEDVKREIRIMKQLSGEPNIVEF 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,934,780
Number of Sequences: 28952
Number of extensions: 110933
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)