Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P22
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 40 1e-04
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 1.8
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 1.8
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 2.4
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 4.2
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 25 4.2
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 5.5
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 24 7.3
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 24 7.3
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 24 7.3
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 24 7.3
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 24 9.7
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 39.9 bits (89), Expect = 1e-04
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +1
Query: 166 CRALRVSWSGELGWELHVPSSQAVPIYRTLIKAKELKNAGWRALTSLSAEKGYHLWNADV 345
C R ++GE G+E+ +P +V TL+ ++ G A +L E G L+ +D+
Sbjct: 205 CLFSRSGYTGEDGFEVSIPEEVSVDFASTLLADTRVRPIGLGARDTLRLEAGMCLYGSDI 264
Query: 346 RTDDNPIEANLGF 384
+P+E +L +
Sbjct: 265 DDTTSPVEGSLSW 277
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 1.8
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 32 RELIAKESFNVTRM--RACPMTHSQLIPIAVFEFRKRPTRQRIKFT 163
+E+I + +F V R+ + P AV EFR++P + K+T
Sbjct: 354 QEVIGRGAFGVVRIAHKVDPQNSGSETLYAVKEFRRKPAESQKKYT 399
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 1.8
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 205 WELHVPSSQAV-PIYRTLIKAKELKNAGWRALTSLSAEKGYHLWNADVRTDDNPIEANL 378
W+ P+S ++ P++ ++ AK ++NA + +++ + L N + + PI+AN+
Sbjct: 108 WKQRPPNSSSLEPVFSPIVTAK-IENALLKYKSTILRHQSPLLANTSISSFSAPIDANI 165
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 2.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 135 RFRNSNTAMGINWECVIGQARIRV 64
+F+N + A + WEC RIR+
Sbjct: 570 KFKNGSIAESVYWECSSPDERIRI 593
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 4.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 119 ILRWVLTGNASLDRPAF 69
+LRWVL +A+L +PA+
Sbjct: 414 LLRWVLVTSANLSKPAW 430
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 4.2
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = +1
Query: 52 ILQRYTNAGLSNDAFPVNTHRSI------RVSKAPYSSENKVYTCRALRVSWSGEL 201
++QR T + + F + R++ RV+ +K+ R ++ WSGE+
Sbjct: 584 LVQRVTGEAIISAIFDIKAKRAVVHVAGCRVTNGTIEKSHKIRLVRNDKIIWSGEI 639
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 145 SENKVYTCRALRVSWSGEL 201
SE +Y C A V WS EL
Sbjct: 448 SEFHLYVCAAFLVKWSSEL 466
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 2 TKQLCIPQCSRELIAKESFNVTRMRACPMTHSQLIPIAVFEFRKRPTRQRIKFTLV 169
T +C+ + + K +F+VT CP+ + FE + Q IK T++
Sbjct: 102 TAWVCVNPLEKSIFGKVAFSVTIGITCPIVFIAI--FCFFETWTQAVAQCIKVTVI 155
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 24.2 bits (50), Expect = 7.3
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 1 HETALHPSVFKGTNSQRILQRY-TNAGLSNDAFPVNTHRSIRVSKAPYSSENKVYTCRAL 177
H +A + G N LQ + T AGL N FP+ T + S S + Y+
Sbjct: 201 HMSATQVAAMGGMNG---LQPFPTQAGLPNQGFPMPTGSQLPFSNQQSSQPSMQYSSHPS 257
Query: 178 RV 183
R+
Sbjct: 258 RM 259
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 244 KSARPAMMERAVPIRVP-RTMRLVMLYKCKLYSLTSRALSKLEYCDGY 104
KS+R + E P+ + ++ ++ ++C +L S+++ +YC+ Y
Sbjct: 384 KSSRRSNGEERDPLLLKSKSGTPILCFRCHKSALVSQSILACDYCNSY 431
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 2 TKQLCIPQCSRELIAKESFNVTRMRACPMTHSQLIPIAVFEFRKRPTRQRIKFTLV 169
T +C+ + + K +F+VT CP+ + FE + Q IK T++
Sbjct: 103 TAWVCVNPLEKSIFGKVAFSVTIGITCPILF--IATFCFFETWTQAVAQCIKVTVI 156
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 23.8 bits (49), Expect = 9.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 179 ESHGPGNSDGNCTFHHRRPCRFTGHLSKR 265
+S PGN+ NC HH C FT KR
Sbjct: 90 QSPRPGNACINCRKHH-LDCNFTRTPLKR 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.129 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,448
Number of Sequences: 5004
Number of extensions: 34068
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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