Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P22
(393 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1207 + 31734940-31735500,31736565-31736683,31736791-317373... 47 6e-06
04_03_0059 - 10504901-10506127 33 0.062
01_06_1124 - 34679205-34680926,34681438-34682811 30 0.58
07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305 28 2.3
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789... 28 2.3
02_01_0443 + 3204142-3204674,3205446-3206178 28 3.1
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 27 4.1
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 27 4.1
11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579... 27 7.1
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 27 7.1
>04_04_1207 +
31734940-31735500,31736565-31736683,31736791-31737318,
31738256-31738354,31739768-31739909
Length = 482
Score = 46.8 bits (106), Expect = 6e-06
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 160 YTCRALRVSWSGELGWELHVPSSQAVPIYRTLIKAKE--LKNAGWRALTSLSAEKGYHLW 333
Y C R ++GE G+E+ VPS AV + + L++ E ++ G A SL E G L+
Sbjct: 219 YACFLTRTGYTGEDGFEISVPSENAVDLAKALLEKSEGKVRLTGLGARDSLRLEAGLCLY 278
Query: 334 NADVRTDDNPIEANLGF 384
D+ P+EA L +
Sbjct: 279 GNDMEQHITPVEAGLSW 295
>04_03_0059 - 10504901-10506127
Length = 408
Score = 33.5 bits (73), Expect = 0.062
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 293 ARHPAFLSSF-ALISVL*IGTACDDGTCSSHPSSPDHETRNALQV*TLFSD 144
A P FL F +L + L +G C DG + HP+ P H + A + L +D
Sbjct: 39 ATSPRFLRRFRSLHAPLPLGVLCPDGAAAFHPAMPPHPSAPAARALALAAD 89
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 30.3 bits (65), Expect = 0.58
Identities = 25/68 (36%), Positives = 32/68 (47%)
Frame = +2
Query: 29 SRELIAKESFNVTRMRACPMTHSQLIPIAVFEFRKRPTRQRIKFTLVEHYESHGPGNSDG 208
+R L+A + R R HSQLI VF+ +RPT L++ Y SHGP D
Sbjct: 21 ARRLVALLLEHQDRRRQLLQIHSQLIAHQVFD--RRPTPWH---ALLKAY-SHGPHPQDA 74
Query: 209 NCTFHHRR 232
F H R
Sbjct: 75 LQLFRHAR 82
>07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305
Length = 611
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 104 IPIAVFEFRKRPTRQRIKFTLVEHYESHGPGNSDGNCTFHHRRPC 238
+ IA+ + RK + + K T+ HY+ G G+ +G PC
Sbjct: 560 VAIAITDHRKVKPKPKPKTTMEVHYKMDGNGDIEGGAPAMTPSPC 604
>03_06_0662 +
35377974-35378270,35378354-35378623,35378795-35378973,
35380073-35380116,35380295-35380384,35380472-35380588,
35380679-35380803,35380883-35381155,35381253-35381386,
35381518-35381604,35381714-35381831
Length = 577
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 94 FPVNTHRSIRVSKAPYSSENKVYTCRALRVSWSG 195
FP + H+S+ V+ A + E + + C + W G
Sbjct: 317 FPCDIHQSV-VALASFKGERRFFACTGFFIEWKG 349
>02_01_0443 + 3204142-3204674,3205446-3206178
Length = 421
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 50 ESFNVTRMRACPMTHSQL-IPIAVFEFRKRPTRQR 151
E+F+ T +R CP+ Q + +AV EF+K+ R
Sbjct: 307 ETFSATDLRDCPVAELQAWLGVAVAEFKKKVAMYR 341
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 80 CPMTHSQLIPIAVFEFRKRPTRQRIKFTLVEHYESHGP 193
C HS+LIP + R ++ L+EHYE H P
Sbjct: 86 CDDRHSELIPCLDRNLIYQ-MRMKLDLNLMEHYERHCP 122
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 62 VTRMRACPMTHSQLIPIAVFEFRKRPTRQRIKFTLVEHYESHGP 193
++ + C +S+LIP + R R+ +L++HYE H P
Sbjct: 70 LSSLPVCDARYSELIPCLDRGLHNQ-LRLRLNLSLMQHYERHCP 112
>11_03_0162 -
10956997-10957323,10957390-10957568,10957823-10957922,
10959333-10959397,10959480-10959572,10961062-10961607,
10961627-10961678,10961753-10961884,10963049-10963210,
10963532-10963582
Length = 568
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 64 YTNAGLSNDAFPVNTHRSIRVSKAPYSSENKVYTCRALRVSW 189
Y + D FP+N+H ++ ++ + NK R L V W
Sbjct: 399 YKSCRTDFDRFPINSHVALIIAFVINNDPNKTNLSRLLIVMW 440
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 11 LCIPQCSRELIAKESFNVTRMR 76
LC+ +CSREL+A +S + ++R
Sbjct: 89 LCMDRCSRELLACKSISKRKLR 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.129 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,264,423
Number of Sequences: 37544
Number of extensions: 231175
Number of successful extensions: 560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -