Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P22
         (393 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.31 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 4    ETALHPSVFKGTNSQRILQRYTNAGLSNDAFPVNTHRSIRVSKAPYSSENKVYTCRALRV 183
            ET LH  + K TN    +  +T+ G    + P++        +AP + +  V +  ++ V
Sbjct: 1140 ETILH-GLKKYTNYSMQVLAFTSGGDGVKSAPIHCQTEQDAPEAPIAIKALVMSSESILV 1198

Query: 184  SW 189
            SW
Sbjct: 1199 SW 1200


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 120 NTAMGINWECVIGQARIRVTLKDS 49
           NT + I+  CVI  A   +  KDS
Sbjct: 243 NTLLSISASCVIAFATSALVSKDS 266


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 187 WSGELGWELHVPSSQAVPIYRTLI 258
           WS  LGW   + S   +P Y   I
Sbjct: 527 WSHVLGWLCGLSSMLCIPGYMIYI 550


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 187 WSGELGWELHVPSSQAVPIYRTLI 258
           WS  LGW   + S   +P Y   I
Sbjct: 580 WSHVLGWLCGLSSMLCIPGYMIYI 603


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.129    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,193
Number of Sequences: 438
Number of extensions: 2294
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)