Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P22
(393 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11860.2 68414.m01366 aminomethyltransferase, putative simila... 44 5e-05
At1g11860.1 68414.m01365 aminomethyltransferase, putative simila... 44 5e-05
At5g14430.2 68418.m01689 dehydration-responsive protein-related ... 29 1.1
At5g14430.1 68418.m01688 dehydration-responsive protein-related ... 29 1.1
At1g04430.1 68414.m00434 dehydration-responsive protein-related ... 29 1.1
At4g14360.1 68417.m02212 dehydration-responsive protein-related ... 28 2.6
At3g23300.1 68416.m02939 dehydration-responsive protein-related ... 28 2.6
At3g27510.1 68416.m03439 DC1 domain-containing protein contains ... 27 4.5
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 24 5.5
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 24 5.5
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 27 6.0
At1g07310.1 68414.m00778 C2 domain-containing protein contains s... 27 6.0
At4g35840.1 68417.m05091 zinc finger (C3HC4-type RING finger) fa... 26 7.9
>At1g11860.2 68414.m01366 aminomethyltransferase, putative similar
to aminomethyltransferase, mitochondrial precursor
SP:O49849 from [Flaveria anomala]
Length = 408
Score = 43.6 bits (98), Expect = 5e-05
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 163 TCRALRVSWSGELGWELHVPSSQAVPIYRTLIKAKE--LKNAGWRALTSLSAEKGYHLWN 336
TC R ++GE G+E+ VP AV + + +++ E ++ G A SL E G L+
Sbjct: 220 TCFLTRTGYTGEDGFEISVPDEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYG 279
Query: 337 ADVRTDDNPIEANL 378
D+ +P+EA L
Sbjct: 280 NDMEQHISPVEAGL 293
>At1g11860.1 68414.m01365 aminomethyltransferase, putative similar
to aminomethyltransferase, mitochondrial precursor
SP:O49849 from [Flaveria anomala]
Length = 408
Score = 43.6 bits (98), Expect = 5e-05
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 163 TCRALRVSWSGELGWELHVPSSQAVPIYRTLIKAKE--LKNAGWRALTSLSAEKGYHLWN 336
TC R ++GE G+E+ VP AV + + +++ E ++ G A SL E G L+
Sbjct: 220 TCFLTRTGYTGEDGFEISVPDEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYG 279
Query: 337 ADVRTDDNPIEANL 378
D+ +P+EA L
Sbjct: 280 NDMEQHISPVEAGL 293
>At5g14430.2 68418.m01689 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 612
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 38 LIAKESFNVTR-MRACPMTHSQLIPIAVFEFRKRPTRQRIKFTLVEHYESHGP 193
++A F V + + C HS+LIP + + ++ +L+EHYE H P
Sbjct: 68 VLAVSRFEVPKSVPICDSRHSELIPCLDRNLHYQ-LKLKLNLSLMEHYEHHCP 119
>At5g14430.1 68418.m01688 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 612
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 38 LIAKESFNVTR-MRACPMTHSQLIPIAVFEFRKRPTRQRIKFTLVEHYESHGP 193
++A F V + + C HS+LIP + + ++ +L+EHYE H P
Sbjct: 68 VLAVSRFEVPKSVPICDSRHSELIPCLDRNLHYQ-LKLKLNLSLMEHYEHHCP 119
>At1g04430.1 68414.m00434 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 623
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 44 AKESFNVTR-MRACPMTHSQLIPIAVFEFRKRPTRQRIKFTLVEHYESHGP 193
A++S V + C HS++IP F + R ++ +L+EHYE H P
Sbjct: 74 AEDSLVVAKSFPVCDDRHSEIIPCLDRNFIYQ-MRLKLDLSLMEHYERHCP 123
>At4g14360.1 68417.m02212 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 608
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 50 ESFNVTRMRACPMTHSQLIPIAVFEFRKRPTRQRIKFTLVEHYESHGP 193
+ F C HS+LIP + R ++ +L+EHYE H P
Sbjct: 69 DGFTPRSFPVCDDRHSELIPCLDRNLIYQ-MRLKLDLSLMEHYERHCP 115
>At3g23300.1 68416.m02939 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 611
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 35 ELIAKESFNVTRMRACPMTHSQLIPIAVFEFRKRPTRQRIKFTLVEHYESHGP 193
E + F C HS+LIP + R ++ +L+EHYE H P
Sbjct: 67 EDVVGNGFTPRSFPVCDDRHSELIPCLDRNLIYQ-MRLKLDLSLMEHYERHCP 118
>At3g27510.1 68416.m03439 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 566
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 182 SHGPGNSDGNCTFHHRRPCRFTGHLSKRRNLRTPDG 289
S+G G S G C F + C F ++ R N + DG
Sbjct: 27 SYGDGYSCGECKFTIHKKCVFVFNIQARINHPSHDG 62
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 23.8 bits (49), Expect(2) = 5.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 230 CDDGTCSSHPSSPDH 186
C+ G+ SHPS+P H
Sbjct: 105 CNCGSPPSHPSTPSH 119
Score = 21.4 bits (43), Expect(2) = 5.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 209 SHPSSPDHET 180
SHPS+P H T
Sbjct: 118 SHPSTPSHPT 127
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 23.8 bits (49), Expect(2) = 5.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 230 CDDGTCSSHPSSPDH 186
C+ G+ SHPS+P H
Sbjct: 105 CNCGSPPSHPSTPSH 119
Score = 21.4 bits (43), Expect(2) = 5.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 209 SHPSSPDHET 180
SHPS+P H T
Sbjct: 118 SHPSTPSHPT 127
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 296 NARHPAFLSSFALISVL*IGTACDDGTCSSHPSSPDHETR 177
N R+P L +F+L + +G + G C SH S DHE++
Sbjct: 52 NLRNPK-LWAFSLFLLSILGISLRLGLCLSHFGSGDHESQ 90
>At1g07310.1 68414.m00778 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 352
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 223 SSQAVPIYRTLIKAKELKNAGWR 291
SS+ + + T++ AK LKN WR
Sbjct: 3 SSEPLDLVVTVVSAKHLKNVNWR 25
>At4g35840.1 68417.m05091 zinc finger (C3HC4-type RING finger)
family protein contains a TG non-consensus donor splice
site at exon 2; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 367 LSDCHRFLHLHSINDNLFRHLRMSTPAIRR 278
L CH HL I++ LFRH S P RR
Sbjct: 207 LPHCHHMFHLPCIDNWLFRH--GSCPMCRR 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.129 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,016,310
Number of Sequences: 28952
Number of extensions: 183762
Number of successful extensions: 431
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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