Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P21
(283 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 33 0.039
At4g30430.1 68417.m04322 senescence-associated family protein si... 30 0.27
At5g40860.1 68418.m04962 hypothetical protein 29 0.48
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 28 1.1
At3g47130.1 68416.m05117 F-box family protein-related contains w... 28 1.1
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 27 1.5
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 27 2.6
At5g43620.1 68418.m05332 S-locus protein-related contains some s... 26 3.4
At3g49300.1 68416.m05388 proline-rich family protein contains pr... 26 3.4
At3g26440.1 68416.m03296 expressed protein contains Pfam profile... 26 3.4
At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA... 26 3.4
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 26 4.5
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 26 4.5
At5g26080.1 68418.m03103 proline-rich family protein contains pr... 26 4.5
At4g36980.1 68417.m05240 expressed protein 26 4.5
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 26 4.5
At3g16510.1 68416.m02107 C2 domain-containing protein contains s... 26 4.5
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 26 4.5
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 26 4.5
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 26 4.5
At5g48540.1 68418.m06001 33 kDa secretory protein-related contai... 25 5.9
At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger) fa... 25 5.9
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 25 5.9
At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family... 25 5.9
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 25 5.9
At2g15520.1 68415.m01776 zinc finger protein, putative strong si... 25 5.9
At1g55900.1 68414.m06411 NLI interacting factor (NIF) family pro... 25 5.9
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote... 25 5.9
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 25 7.8
At3g52890.2 68416.m05829 protein kinase (KIPK) identical to prot... 25 7.8
At3g52890.1 68416.m05828 protein kinase (KIPK) identical to prot... 25 7.8
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 25 7.8
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 25 7.8
At1g13000.1 68414.m01509 expressed protein contains Pfam profile... 25 7.8
At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containi... 25 7.8
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 32.7 bits (71), Expect = 0.039
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 140 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPPKRYDKP 274
++A P P+ P+ GP P+S+ PA P N+P Y +P
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRP 289
>At4g30430.1 68417.m04322 senescence-associated family protein
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855
Length = 272
Score = 29.9 bits (64), Expect = 0.27
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Frame = -3
Query: 125 CRP----DGTPLLSTTWNSVCGSH----AQYGEEENTKLSCRICQSC 9
C+P D T + STTWN G+H Q + E KL C C++C
Sbjct: 173 CKPSNDCDFTYITSTTWNKTSGTHKNSDCQLWDNEKHKL-CYNCKAC 218
>At5g40860.1 68418.m04962 hypothetical protein
Length = 184
Score = 29.1 bits (62), Expect = 0.48
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 109 HHYCPPRGTLFAAAMHNTAKKKTRNFHVE 23
HH C PR + F ++ + KKK + HV+
Sbjct: 156 HHRCLPRFSSFKGSLMDKRKKKKKKIHVK 184
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 152 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNPPNYPPKRYDKPLAR 283
P P S P N P ++ P + P+ +N P PP YD P R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402
>At3g47130.1 68416.m05117 F-box family protein-related contains weak
hit to TIGRFAM TIGR01640 : F-box protein interaction
domain;
Length = 360
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 2 SADNSDIFDMKVSCFLLRRIVH-GCRKQSSTWWTIVVFHRDGNSDHVVIANPDPFFSQPS 178
S+ +SD++ K++C + I H S+ ++ F +++++P+P+ S S
Sbjct: 40 SSRSSDLYTFKIACEVFIEIPHLNITSSSAPPRLLIAFQDFHGKKLMLVSSPNPYVSSSS 99
Query: 179 NGPS 190
+ S
Sbjct: 100 SSSS 103
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 115 MEHHYCPPRGTLFAAAMHN-TAKKKTRNFHVE 23
+ HHYCPP ++ N T + KT +E
Sbjct: 492 LRHHYCPPVSRFISSLETNLTIRSKTTEMKIE 523
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 122 GNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPP 256
G+ DH+ I + + PSG Y P + P PP YPP
Sbjct: 127 GSKDHIQITSTPEQERSTESFPSG-YHPTNYAPPVY---PPGYPP 167
>At5g43620.1 68418.m05332 S-locus protein-related contains some
similarity to S-locus protein 4 GI:6069478 from
[Brassica rapa]
Length = 410
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 137 VVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYP 253
VV NP+P P P +P+ + P +V + PNYP
Sbjct: 114 VVYGNPNPQIV-PLPLPYRKLDPLDSLPQWVPNSTPNYP 151
>At3g49300.1 68416.m05388 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 86
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 107 VFHRDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPP 256
V H D NS + V + P GP ++P T P + F PP PP
Sbjct: 30 VTHTDQNSLNKVEESIPTIMDYPEPGPDPKHDP--TKPGY-GFPPPPPPP 76
>At3g26440.1 68416.m03296 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 396
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 53 RRIVHGCRKQSSTWWTIVVFHRDGNS 130
R+ + C K+ S +TIV+FH DG +
Sbjct: 143 RKNIDACVKKFSDNFTIVLFHYDGKT 168
>At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA) /
sigma factor 1 (SIG1) identical to sigma factor SigA
[Arabidopsis thaliana] GI:5478439, sigma factor 1
[Arabidopsis thaliana] GI:2353171, plastid RNA
polymerase sigma-subunit [Arabidopsis thaliana]
GI:2398851; contains Pfam profiles PF04545: Sigma-70,
region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
region 2
Length = 502
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -1
Query: 256 GWIIGRIEIDERRSSAYGFIISARTV*WLREEXXXXXXXXXVTIAVPMEHH 104
G +IG + E+ S+ GF IS W+R+ T+ +P H
Sbjct: 291 GGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLH 341
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 143 IANPDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPPKRYDKP 274
I+ P P FS P + P ++ P P +P PP Y P
Sbjct: 31 ISPPPPPFSPPHHPPPPHFSPPHQPPPSPYPHPHPPPPSPYPHP 74
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 29 MKVSCFLLRRIVHGCRKQSSTW 94
M+ SCF ++++GC + SS+W
Sbjct: 131 MESSCFPEGQLLNGCSEASSSW 152
>At5g26080.1 68418.m03103 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 141
Score = 25.8 bits (54), Expect = 4.5
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Frame = +2
Query: 137 VVIANPDPFFSQPSNGP------SGNYEPISTGPAFVDFNPPNYPPKRYDKP 274
V I P P +S+P P S PI P + PP YPP Y P
Sbjct: 51 VTIPPPPPVYSRPVAFPPPPPIYSPPPPPIYPPPIYSPPPPPIYPPPIYSPP 102
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 116 RDGNSDHV-VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPPKRYD 268
R+G DH I+ P + G SG+ P F ++PP PP + D
Sbjct: 320 RNGRGDHSDEISKPKIEYITEFGGGSGDMR----SPKFEGYSPPRSPPSQSD 367
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 110 FHRDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDF-NPPNYPPKRYDKP 274
F+ + +D+ P P PS+ PS ++ P TGP+ + +P ++ P D P
Sbjct: 219 FYDNPTNDYPADVPPPP----PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270
Score = 25.8 bits (54), Expect = 4.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 149 NPDPFFSQPSNGPSGNYEPISTGP 220
NP+P++S P + P+ + S+ P
Sbjct: 316 NPEPYYSSPHSAPAPSSTSFSSAP 339
>At3g16510.1 68416.m02107 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 360
Score = 25.8 bits (54), Expect = 4.5
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +2
Query: 107 VFHRDG--NSDHVV---IANPDPFFSQPSNGPSGNYEPISTGPAFVDFN-PPNYPPKRYD 268
VFH+D +S HV + P F S +N P + P PP+ PP+ Y
Sbjct: 159 VFHQDPPVSSSHVYTNPMDIPSDFSSATTNYPPPQSSEANFYPPLSSIGYPPSSPPQHYS 218
Query: 269 KP 274
P
Sbjct: 219 SP 220
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 152 PDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPPKRYDKP 274
P P +S P S P+ + P ++PP PPK P
Sbjct: 640 PPPVYSPPPPVYSPPPPPVKSPPPPPVYSPPLLPPKMSSPP 680
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 149 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPP 256
+P P S PS+ P + P S P + + P PP
Sbjct: 37 SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 72
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 149 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPP 256
+P P S PS+ P + P S P + + P PP
Sbjct: 86 SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 121
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 152 PDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPPKRYDKP 274
P P ++ P + P+ + P+ T P PP Y P Y+KP
Sbjct: 57 PPPVYTPPVHKPTLS-PPVYTKPTLP---PPAYTPPVYNKP 93
>At5g48540.1 68418.m06001 33 kDa secretory protein-related
contains Pfam PF01657: Domain of unknown function,
duplicated in 33 KDa secretory proteins
Length = 263
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 35 VSCFLLRRIVHGCRKQSSTW 94
V CFLL +V CR S W
Sbjct: 6 VKCFLLLALVCSCRAADSIW 25
>At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 376
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 89 TWWTIVVFHRDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFV 229
+W + +DGN + DP S PS P + IS FV
Sbjct: 2 SWVRFTIEQKDGNFAYPPPFYKDPILSPPSPPPPSSGNRISPAVLFV 48
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +2
Query: 152 PDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPPKRYDKPLA 280
P F P P ST P V PP PPK PL+
Sbjct: 56 PPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLS 98
>At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family
protein
Length = 291
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 152 PDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNY 250
PD +P + PS + P S+ PA +PP++
Sbjct: 13 PDSDDDKPDDPPSVWHRPTSSLPALPSLDPPSH 45
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 98 STTWNSVCGSHAQYGEEENTKLSCRI 21
S WNS C H Y E++ + S ++
Sbjct: 361 SRKWNSTCEFHCHYSEDQLMECSRKL 386
>At2g15520.1 68415.m01776 zinc finger protein, putative strong
similarity to zinc finger protein [Arabidopsis thaliana]
GI:976277
Length = 483
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 143 IANPDPFFSQPSNGPSGNYEPISTGPAFVDFNPPNYPPKRYDKPLAR 283
+A PF P+ G +E STG N PPK KP R
Sbjct: 385 LALSQPFTDSPTVYSPGLFETGSTGTFQKKAKQRNRPPKHARKPKPR 431
>At1g55900.1 68414.m06411 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 376
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +2
Query: 176 SNGPSGNYEPI-STGPAFVDFNPPNYPP 256
S + Y + ST F DF PPN PP
Sbjct: 31 STNSTSRYSGVTSTQSMFSDFPPPNQPP 58
>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GI:4105699
from [Arabidopsis thaliana]
Length = 996
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 74 RKQSSTWWTIVVFHRDGNSDHVVIANPD 157
R + WT++ FH+ G S+H ++ + D
Sbjct: 650 RAMERSKWTLMSFHKLGFSEHEILESLD 677
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 25.0 bits (52), Expect = 7.8
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +2
Query: 152 PDPFFSQP--SNGPSGNYEPISTGPAFVDFNPPNYP-PKRYDKP 274
P P S P S+ P Y P P V +NPP P P Y P
Sbjct: 739 PTPIHSPPPQSHPPCIEYSP--PPPPTVHYNPPPPPSPAHYSPP 780
>At3g52890.2 68416.m05829 protein kinase (KIPK) identical to protein
kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 934
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 128 YCRPDGTPLLSTTWNSVCGSHAQYGEEENTKLSCRICQS 12
Y + + + +SV A G +EN+ SC + QS
Sbjct: 403 YTSSHNPKICTDSLSSVSNKEAHQGSDENSSGSCNVSQS 441
>At3g52890.1 68416.m05828 protein kinase (KIPK) identical to protein
kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 934
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 128 YCRPDGTPLLSTTWNSVCGSHAQYGEEENTKLSCRICQS 12
Y + + + +SV A G +EN+ SC + QS
Sbjct: 403 YTSSHNPKICTDSLSSVSNKEAHQGSDENSSGSCNVSQS 441
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 146 ANPDPFFSQP--SNGPSGNYEPISTGPAFVDFNPPNYPP 256
ANP P S P ++ P P+++ P V PP PP
Sbjct: 68 ANPPPPVSSPPPASPPPATPPPVASPPPPVASPPPATPP 106
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 146 ANPDPFFSQP--SNGPSGNYEPISTGPAFVDFNPPNYPP 256
ANP P S P ++ P P+++ P V PP PP
Sbjct: 68 ANPPPPVSSPPPASPPPATPPPVASPPPPVASPPPATPP 106
>At1g13000.1 68414.m01509 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 401
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 62 VHGCRKQSSTWWTIVVFHRDGNS 130
V C K+ S +TIV+FH DG +
Sbjct: 155 VDACVKKFSKDFTIVLFHYDGRT 177
>At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 598
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 115 MEHHYCPPRGTLFAAAMHNTAKKKTRNFHVEYV-RVVCR 2
M H C P + +H K+K + +EY+ R+V R
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,014,798
Number of Sequences: 28952
Number of extensions: 154747
Number of successful extensions: 542
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 241748928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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