Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P20
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...   154   7e-39
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.9  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    27   2.5  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    27   2.5  
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   3.3  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   4.3  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   10.0 
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   10.0 

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score =  154 bits (374), Expect = 7e-39
 Identities = 74/178 (41%), Positives = 106/178 (59%)
 Frame = +3

Query: 18  FACLGFLSPANRSALMTYALVAWVLLGAIAGYVSARVYKSFGGHRWKSNMLLTSTVCPGV 197
           FA  G ++P+ R +L T  +  +++ G ++GYVSA  YK   G   K N+LLT  V PG 
Sbjct: 351 FAIFGIVAPSRRGSLATATVALFIISGFVSGYVSALSYKLMQGMLRKRNLLLTPFVVPGF 410

Query: 198 VFCLFFIMNLVLWGKGSSAAVPFLTLVTLLALWFGFSMPLTFIGAYFGSRKTILDHPVRT 377
           +       N+V W K SS+ VPF + + L+ L+  F++PL+F+G+  G R      PVRT
Sbjct: 411 MLAAALFFNMVFWSKSSSSTVPFSSWLLLIFLYLLFTVPLSFVGSLIGFRSREFVPPVRT 470

Query: 378 NQIPRQIPEQSLYTQPIPGIVMGGVLPFGCIFIQLFFILNSLWSSQMYYMFESLFLVF 551
           NQIPRQIP  S++    P  ++GG +PF  I I+LF IL+SLW   +Y+MF   F  F
Sbjct: 471 NQIPRQIPSHSIWLSSFPSAIIGGSIPFLVILIELFSILDSLWFHPLYFMFGFSFFCF 528


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -1

Query: 359 QDRLPGAEVSTDKRERHRESEPQGQESDQR*ERNGR*GPFAPQY------KIHYEEQAEH 198
           +++   AE    ++ER + ++   +ES    +     GP AP Y        HYEE+ E 
Sbjct: 739 EEKARKAEEKRLQKERAKYAKQMSRESAHADQAIANTGPVAPPYFEHETEPSHYEEEEEE 798

Query: 197 DP 192
           +P
Sbjct: 799 EP 800


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 198 VFCLFFIMNLVLWG 239
           +FCLFF+ +LVL+G
Sbjct: 478 IFCLFFLFSLVLFG 491


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 240 KGSSAAVPFLTLVTLLALWFGFSMPLTFIGAYFGSRKTIL 359
           +G+    PFL  + L A+ FG +    F+  YFG R  ++
Sbjct: 295 RGTGLNSPFLAALILDAVNFGCTFGAIFVLEYFGRRGPLI 334


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 168 LLTSTVCPGVVFCLFFIMNLVLWG 239
           L  ST+C GV   L F +  +LWG
Sbjct: 50  LFRSTICFGVSLFLSFFLVRILWG 73


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 411 GSALVSAAGSDSFAPDGPGSSSW 343
           G  L   AGSD  A D P + SW
Sbjct: 907 GGILAQGAGSDGVAKDVPENHSW 929


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 354 ILDHPVRTNQIPRQIPEQSLYTQPIPGI 437
           +LD PV  +Q     P Q+ Y  P PGI
Sbjct: 380 LLDKPVSLDQTSHPFPHQNTYILP-PGI 406


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 125 PSADVAGDGAEQHPSHQRVRHQST 54
           P+AD + + A +  SH+R  H+S+
Sbjct: 104 PTADASPESAGEDDSHRRSSHESS 127


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 310 IENPNHKAKRVTNVKNGTAAEDPLPHNTRFIMKNRQNT 197
           + + N++ K V  VKNGT+ ++P    TR +     NT
Sbjct: 595 VHSLNNEQKYVLEVKNGTSEKNP----TRIVALENGNT 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,790
Number of Sequences: 5004
Number of extensions: 46712
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)