Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P20
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   3e-25
SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)                       85   4e-17
SB_55369| Best HMM Match : EMP70 (HMM E-Value=0.026)                   47   1e-05
SB_31883| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.030
SB_7681| Best HMM Match : Annexin (HMM E-Value=0)                      35   0.039
SB_59283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.5  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             29   1.9  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             29   2.6  
SB_53498| Best HMM Match : Ion_trans (HMM E-Value=8.9e-32)             29   3.4  
SB_31316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)                       28   5.9  
SB_34533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_34207| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_29370| Best HMM Match : fn3 (HMM E-Value=0)                         28   5.9  
SB_7352| Best HMM Match : RmlD_sub_bind (HMM E-Value=1)                27   7.9  
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score =  111 bits (268), Expect = 3e-25
 Identities = 55/185 (29%), Positives = 97/185 (52%), Gaps = 1/185 (0%)
 Frame = +3

Query: 6   VTLAFACLGFLSPANRSALMTYALVAWVLLGAIAGYVSARVYKSFGGHRWKSNMLLTSTV 185
           V + F  +G L    R ++++  +  +       G+    +Y   GG  W   M++ + +
Sbjct: 259 VVILFTIMGDLY-TGRGSILSATIFVYAACAPANGFFGGALYSRQGGRMWIRQMVVGAVL 317

Query: 186 CPGVVFCLFFIMNLVLWGKGSSAAVPFLTLVTLLALWFGFSMPLTFIGAYFGSRKTILDH 365
            P +V  + F++N +     +S A+PF T+V +  +     +PL  +G   G   +   +
Sbjct: 318 FPSLVCGMAFLINFIAIYYHASRAIPFGTMVAVACIVIFVILPLNLVGTVLGRNLSGTPN 377

Query: 366 -PVRTNQIPRQIPEQSLYTQPIPGIVMGGVLPFGCIFIQLFFILNSLWSSQMYYMFESLF 542
            P R N +PR IPE+  + +P   + +GGVLPFG IFI+++FI  S W+ ++YY+F  + 
Sbjct: 378 APCRVNTVPRPIPEKKWFMEPAVIVCLGGVLPFGSIFIEMYFIFTSFWAYKIYYVFGFML 437

Query: 543 LVFLI 557
           LVF I
Sbjct: 438 LVFFI 442


>SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)
          Length = 392

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 36/85 (42%), Positives = 55/85 (64%)
 Frame = +3

Query: 3   LVTLAFACLGFLSPANRSALMTYALVAWVLLGAIAGYVSARVYKSFGGHRWKSNMLLTST 182
           ++ L FA LG LSPA+R +++   ++ +V +G  AGY +AR+YK+  G  WK +  LT+T
Sbjct: 216 VIILVFAMLGMLSPASRGSMVQAIILLYVFMGMFAGYFAARLYKTLKGQNWKKSAFLTAT 275

Query: 183 VCPGVVFCLFFIMNLVLWGKGSSAA 257
           + PG V  + F +N  +WGK SS A
Sbjct: 276 LYPGFVSAICFFLNFFIWGKHSSGA 300


>SB_55369| Best HMM Match : EMP70 (HMM E-Value=0.026)
          Length = 370

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 288 ALWFGFSMPLTFIGAYFGSRK-TILDHPVRTNQIPRQIPEQSLYTQPIPGIVMGGVLPFG 464
           A + GF  PLT IG  FG    T  D P RT  IPR+IP    Y      +++GG LPF 
Sbjct: 100 AFYIGF--PLTVIGGIFGKNSATSFDAPCRTKNIPREIPPVPWYRSVSVHMLVGGFLPFR 157

Query: 465 CIFIQLF 485
              + +F
Sbjct: 158 STGLYVF 164


>SB_31883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 357 LDHPVRTNQIPRQIPEQ 407
           ++ PVRTNQIPRQIPEQ
Sbjct: 2   IEQPVRTNQIPRQIPEQ 18


>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 426

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -1

Query: 359 QDRLPGAEVSTDKRERHRESEPQGQESDQR*ERNGR*GPFAPQYKIHYEEQAEHDPGAYG 180
           +D L  A+   + RER  E++P GQ  ++  ER    G   P+     EE+  H PG + 
Sbjct: 282 EDALKRAQPIENGRERKEEADPPGQHHEEE-ER----GVHPPEQHHEEEERGVHPPGEHH 336

Query: 179 GCEQHVALPP 150
             E+  A PP
Sbjct: 337 EEEERGAHPP 346


>SB_59283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 290 LVVRILDASHVYRCLLRLQEDDPGPSGANES 382
           ++++ LD+   + CL+   E  P P  ANES
Sbjct: 41  IIIQELDSDEEWECLVEATEASPSPEDANES 71


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +2

Query: 344 QEDDPGPSGANE--SDPAADTRAEPVHAAHTGYRDGRSVAFRMYLHPTL-----LHPQLS 502
           +EDD G   ++E  SD   +T AE ++  HT  +DG +      +  T+     +  Q  
Sbjct: 608 EEDDDGNESSSEESSDDEPETVAERINIRHTHVQDGEAGGITQQIGATMVPLNAIRIQTK 667

Query: 503 MVQSDVLHVRVPVPRILD 556
           MV+ +   +++P   I+D
Sbjct: 668 MVKEE-FDIKIPGLLIID 684


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 277 SLSWPCGSDSRCLSRLSVLTSAPGR-RSWTIRCERIRSRGRYQSRACTRSPYR 432
           SL+    S ++  SR  + + +P R RSW+    R RS  R +SR+ TRS  R
Sbjct: 403 SLNSSSRSRTKSRSRSRIRSRSPARSRSWSHTRSRSRSHTRSRSRSHTRSRSR 455


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 289  PCGSDSRCLSRLSVLTSAPGRRSWTIR 369
            PCGS+S C+S L++ T   G +++TIR
Sbjct: 1362 PCGSESFCISALAIRT---GAKNFTIR 1385


>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 246 SSAAVPFLTLVTLLALWFGFSMPLTFIGAYFGS 344
           S  A  + TLVT+  L +G  +P+TF+G   GS
Sbjct: 358 SIPAAFWYTLVTMTTLGYGDIVPVTFLGKIIGS 390


>SB_53498| Best HMM Match : Ion_trans (HMM E-Value=8.9e-32)
          Length = 294

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 246 SSAAVPFLTLVTLLALWFGFSMPLTFIGAYFGS 344
           S  A  + TLVT+  L +G   P+TF+G   GS
Sbjct: 173 SIPAAFWYTLVTMTTLGYGDITPVTFVGKIIGS 205


>SB_31316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 342 SRKTILDHPVRTNQIPRQIPEQSLYTQPIPGIVMGGVLPFGCIFIQLF-FILNSLWSS 512
           SR  +L  P  T+   R++  Q L    IP + +GG+ P+ C +   +  I   LWS+
Sbjct: 49  SRCRLLSCPTTTSPAKRRVGVQCL---AIPALHLGGLFPY-CAYTYTYQIIAEQLWSA 102


>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
          Length = 883

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 446 AHHDTRYGLRVQ-ALLWYLPRDLIRSH 369
           A  +TR  +  + +LLW LPR++IRSH
Sbjct: 509 ADGETRAAVTTKTSLLWKLPREVIRSH 535


>SB_34533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
 Frame = +3

Query: 165 MLLTSTVCPGVVFCLFFIMNLVLWGKGSSAAVPFLTLVTLLALWFGFSMPLTFIGAYF-- 338
           MLLT       +  ++ +  L+           + T+ TL+   FGF +PL  I + +  
Sbjct: 135 MLLTQKPYKNAIIIMWLLAALIACLFPIQTTFQWSTIFTLMMFSFGFIIPLIIISSMYIT 194

Query: 339 ---GSRKTI--LDHPVRTNQIPRQIPEQSLYTQP---IPGIVMGGVLPF 461
               S+K I  ++  V ++ + RQ+ ++    +    + G+   G LPF
Sbjct: 195 IFKISKKVIVPIERRVSSDDLKRQMRKEHQLARTGALVTGLFFVGWLPF 243


>SB_34207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 84  WVLLGAIAGYVSARVYKSFGGHRWKSNMLLTSTVCPGVVFCLFFI 218
           WVL+G +    +  V + F    W SN+     +C G    LFF+
Sbjct: 27  WVLIGFVFTLCAEEVRQFFESSDWASNVW---NLCDGFAMVLFFL 68


>SB_29370| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 579

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 365 SGANESDPAADTRAEPVHAAHTGYRDGRSVAFRMYLHPT 481
           SG N SD +     +PV A H   R+GR V +++  H T
Sbjct: 268 SGYNTSDSSLQLLWQPVEATH---RNGRLVGYKIRYHVT 303


>SB_7352| Best HMM Match : RmlD_sub_bind (HMM E-Value=1)
          Length = 305

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 377 ESDPAADTRAEPVHAAHTGYRDGRSVAFRMYLHP 478
           E+D A D R  P  A    YR+  S   R YL+P
Sbjct: 249 ENDLAHDHRNNPRLAVKALYREATSTTVRAYLYP 282


>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 377 ESDPAADTRAEPVHAAHTGYRDGRSVAFRMYLHP 478
           E+D A D R  P  A    YR+  S   R YL+P
Sbjct: 423 ENDLAHDHRNNPRLAVKALYREATSTTVRAYLYP 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,043,166
Number of Sequences: 59808
Number of extensions: 399406
Number of successful extensions: 1385
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)