Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P19
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_39407| Best HMM Match : TIG (HMM E-Value=0) 29 3.6
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11) 28 6.2
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_8905| Best HMM Match : FYVE (HMM E-Value=0.13) 28 6.2
SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6) 27 8.2
SB_10240| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -3
Query: 335 LPGI**CLSKAVCFACSLGKTYSISAHPLITRRLLLAAKPGQQHAKQYNIHTLWKPYH 162
+P C KA F C L K ++ H L T+ LL KP + + + H + H
Sbjct: 631 MPAFATCGGKA--FLCLLRKPVQVTLHNLSTKLWLLRGKPSAEISSVFKYHNTKQTLH 686
>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
Length = 1710
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 118 TNGLTSSIVMTSKPYSLSCL 59
T G T+ VMTS PYS+ CL
Sbjct: 1328 TLGSTACTVMTSSPYSIDCL 1347
>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 487 SWHDNQGNNCDGLTSV--FRVAIDECDRLWV 573
SW D NNCDGL ++ DE D LW+
Sbjct: 193 SWVDQADNNCDGLDKPKDLKLRTDE-DLLWI 222
>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
Length = 1384
Score = 27.9 bits (59), Expect = 6.2
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = -3
Query: 572 THSRSHSSIATRNTDVSPSQLFPWLSCQE*SGYPTIRPWLSIVPSVTGLPSLNRGIVVNI 393
T + +++ AT N V+P+ + + + PT++ ++ P+ T P+LN +
Sbjct: 834 TPTLNYTVAATPNFTVTPTLNYTVAATSNFTVTPTLKYMVAATPNFTVTPTLNYTVAATS 893
Query: 392 LDLFLPTLL*CTSTSIN-TELPGI**CLSKAVCFACSLGKTYSISAHPLIT 243
PTL + + N T P + ++ F + Y+++A P T
Sbjct: 894 NFTVTPTLKYTVAATPNFTVTPTLNYTVAATPNFTVTPTLNYTVAATPNFT 944
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -3
Query: 269 SISAHPLITRRLLLAAKPGQQHAKQYNIHTLWKPYHISNLRSPSLYESQTNK 114
SIS PL T + P Q H + +H PY+I ++ PSL S ++
Sbjct: 105 SISVPPLTT------SSPSQYHPLLHPVHLSTIPYYIQSISVPSLTTSSPSQ 150
Score = 27.5 bits (58), Expect = 8.2
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Frame = -3
Query: 455 LSIVPSVTGLPSLNRGIVVNI-LDLFLPTLL*CTSTSINTELPGI**CLSKAVCFACSLG 279
+S+ P T PS N ++ + L L + + + T P L V + +
Sbjct: 10 ISVTPLTTSSPSQNHPLLHPVHLSTTLYYIQSISEPPLTTSSPSQYHPLLHPVHLSTTPY 69
Query: 278 KTYSISAHPLITRRLLLAAKPGQQHAKQYNIHTLWKPYHISNLRSPSLYESQTNK 114
SIS PL T + P Q H + +H PY+I ++ P L S ++
Sbjct: 70 YIQSISVPPLTT------SSPSQYHPLLHPVHLSTIPYYIQSISVPPLTTSSPSQ 118
>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 852
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -3
Query: 554 SSIATRNTDVSPSQLFPWLSCQE*SGYPTIRPWLSIVPSVTGLPSLNRGIVV 399
SSIA +VSPS +F S E Y P + VP V L N +V
Sbjct: 122 SSIAKDEEEVSPSTIFAVASILEGCSYINGSPQNTFVPGVMELAEQNDVFIV 173
>SB_8905| Best HMM Match : FYVE (HMM E-Value=0.13)
Length = 687
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 211 SSTLNNTTYILSG-NRTTFLT*DLQAYTSLKRTNGLTSSIVMTSKPYS 71
+ LN TT + G N TT +T YT+ T GL ++ MT PY+
Sbjct: 555 TGVLNTTTPMTGGLNTTTPMTGG--PYTTAPMTRGLNTTTPMTGGPYT 600
>SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6)
Length = 315
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 572 THSRSHSSIATRNTDVSPSQLFPWLSCQE 486
+HS S N P +L PW++CQE
Sbjct: 61 SHSIGDSLSLNSNDSNDPRRLVPWVNCQE 89
>SB_10240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 262 DIEYVFPSEQAKQTALDKHYYIPGSSVLIDV--EVHYNKVGKNKS 390
DI + FP K LDK++Y P ++ V + HY KS
Sbjct: 9 DIYHYFPFNATKSPVLDKYHYFPFNATKSPVLDKYHYFPFNVTKS 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,399,319
Number of Sequences: 59808
Number of extensions: 381961
Number of successful extensions: 980
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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