Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P19
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    29   1.8  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    29   1.8  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    29   1.8  
AF026211-7|AAB71292.1|  306|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z81484-2|CAB03970.2|  334|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    27   9.5  
AB275891-1|BAF34314.1|  334|Caenorhabditis elegans D-aspartate o...    27   9.5  

>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +1

Query: 349  DVEVHYNKVGKNKSRIFTTIPRFSEGRPVTLGTIDNQGRIVG--YPDYSWHDNQGN---- 510
            D +VH +K    K R      + +  R    G ++ +GR +G  +P +    NQG     
Sbjct: 1271 DDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNVEGRALGGEFPVHDTETNQGGLLQV 1330

Query: 511  NCDGLTSVF 537
             CDG+  +F
Sbjct: 1331 RCDGVAVIF 1339


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +1

Query: 349  DVEVHYNKVGKNKSRIFTTIPRFSEGRPVTLGTIDNQGRIVG--YPDYSWHDNQGN---- 510
            D +VH +K    K R      + +  R    G ++ +GR +G  +P +    NQG     
Sbjct: 1271 DDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNVEGRALGGEFPVHDTETNQGGLLQV 1330

Query: 511  NCDGLTSVF 537
             CDG+  +F
Sbjct: 1331 RCDGVAVIF 1339


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +1

Query: 349  DVEVHYNKVGKNKSRIFTTIPRFSEGRPVTLGTIDNQGRIVG--YPDYSWHDNQGN---- 510
            D +VH +K    K R      + +  R    G ++ +GR +G  +P +    NQG     
Sbjct: 1271 DDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNVEGRALGGEFPVHDTETNQGGLLQV 1330

Query: 511  NCDGLTSVF 537
             CDG+  +F
Sbjct: 1331 RCDGVAVIF 1339


>AF026211-7|AAB71292.1|  306|Caenorhabditis elegans Hypothetical
           protein T13B5.7 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
 Frame = +1

Query: 103 KSVRLFV*DSYKLGDLKLEMWYGFQRVCM-----LYCLACCWPGLAAKSNLRVIRGWADI 267
           KSVR FV D    G +  +  Y  +R C+     L C +     + AK     +     +
Sbjct: 201 KSVRAFVSDKGINGGIPCDPKYDTRRTCLNMDIGLNCASKFMKDINAKGKREAVHSIHSL 260

Query: 268 EYVFPSEQAKQTALDKHYYIPGSSVLIDVEVHYNKVGKNKSRI 396
             + P        LD  Y IP S V       YN + +N  R+
Sbjct: 261 AQLRPWANKMNCGLDV-YLIPDSKVF---RYDYNGIEENVHRV 299


>Z81484-2|CAB03970.2|  334|Caenorhabditis elegans Hypothetical
           protein C47A10.5 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 328 PGSSVLIDVEVHYNKVGKNKSRIFTTIPRFSEGRPVTLGTIDNQGR 465
           P   V++DVE H++K    K  I  TIP+ +    V +G++  + R
Sbjct: 197 PIRGVVLDVEAHWHKHFNYKDFITFTIPKENS---VVIGSVKQENR 239


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 508 NNCDGLTSVFRVAIDECDRL 567
           N+CD ++++F+ AID C  L
Sbjct: 711 NSCDEISNLFKTAIDRCPDL 730


>AB275891-1|BAF34314.1|  334|Caenorhabditis elegans D-aspartate
           oxidase protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 328 PGSSVLIDVEVHYNKVGKNKSRIFTTIPRFSEGRPVTLGTIDNQGR 465
           P   V++DVE H++K    K  I  TIP+ +    V +G++  + R
Sbjct: 197 PIRGVVLDVEAHWHKHFNYKDFITFTIPKENS---VVIGSVKQENR 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,468,979
Number of Sequences: 27780
Number of extensions: 285440
Number of successful extensions: 692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)