Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P18
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 28 1.00
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1... 26 4.0
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 4.0
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 4.0
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 26 5.3
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 26 5.3
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 9.3
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 9.3
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 9.3
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 28.3 bits (60), Expect = 1.00
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Frame = +1
Query: 268 NTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEHS---GAMFIDSKINVYEQFK---QDVQ 429
N L+++PH N ++ N K IG+ G + H A F+ S + Q K QD++
Sbjct: 484 NYTLQINPHSGINPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDME 543
Query: 430 NTGVSEVNELPWXXXXXXXXXINDFVRSATHEAIDEIVT 546
+ L W + D S E+VT
Sbjct: 544 SMDAEYYRSLVWILDNDITGVL-DLTFSVEDNCFGEVVT 581
>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 111 SVFEEVIVRLQRWTSDESQSRNGKPFRRIW 200
+ EE +V LQ+ S E R+ + FR+IW
Sbjct: 6 NALEEKVVELQQSESVEVIKRHFREFRKIW 35
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 496 NDFVRSATHEAIDE--IVTPSELDGVLLVLIDALYFKG 603
+D ++A E I+E + P E D V+L DA++ KG
Sbjct: 164 SDEKQNAYEEKIEERILANPDESDDVMLAARDAIFSKG 201
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 26.2 bits (55), Expect = 4.0
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = +1
Query: 76 NAYGKCNDYTAHQFLKRSLYDFNA--GLVTRVNQETESHFVVSGLSAWAILSTLSFGAAE 249
++Y + Y+AH KR + F+ GL E F++S I + A +
Sbjct: 444 DSYAEIMRYSAHDLKKRLMIRFDGEDGL-DYGGLSREFFFLLSHKMFDPIYCLFEYSAVD 502
Query: 250 ETFDEINTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEH 366
N L+++PH N ++ N + IG+ G + H
Sbjct: 503 ------NYTLQINPHSSINPEHLNYFRFIGRVIGLAIFH 535
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 CIREVQRLYGSSVFEEVIVRLQRWTSDESQSRNGKPFR-RIWTISMGNSIDAIVWR 242
C+ E + E++IVR + W +S + G + + +++ N + VW+
Sbjct: 54 CVDEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSIYEVGSFKVAIANVLQKSVWK 109
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 5.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 437 PVFWTSCLNC 408
PVFW SCL+C
Sbjct: 229 PVFWISCLSC 238
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 534 INSFVSCRSNEIVYCSRG 481
+NS VSC+S I+ C +G
Sbjct: 166 VNSDVSCKSQHILDCGKG 183
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 534 INSFVSCRSNEIVYCSRG 481
+NS VSC+S I+ C +G
Sbjct: 166 VNSDVSCKSQHILDCGKG 183
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 154 VTRVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVL 279
+ R+N+ E FV+ ST + E+ FDE++ V+
Sbjct: 125 IVRINEIMEKQFVLQKKKNELQSSTEEIDSTEKDFDELHKVI 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,566
Number of Sequences: 5004
Number of extensions: 48837
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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