Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P18
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0012 - 7346282-7347136,7347234-7347593 44 1e-04
11_02_0014 - 7352619-7352918,7353173-7353418 43 2e-04
01_06_0824 - 32243495-32244319,32244449-32244859 41 0.001
11_02_0011 - 7337618-7338496,7338596-7338991 40 0.002
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 37 0.012
01_01_1152 + 9170628-9171899 37 0.016
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 36 0.036
11_01_0771 + 6453130-6454488 33 0.19
11_01_0767 + 6438648-6438809,6439146-6440000 32 0.34
04_03_0991 - 21500143-21500799,21500834-21501172 30 1.4
11_01_0750 - 6315126-6315896,6316371-6316784 30 1.8
11_06_0181 + 20985960-20987825,20987904-20989169 29 2.4
05_03_0488 - 14651532-14652265,14652404-14653988 29 3.1
08_01_0095 + 686182-686184,686440-686682,686755-687228 29 4.1
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207... 27 9.6
05_04_0193 + 18939869-18939988,18940714-18941012,18941078-189411... 27 9.6
03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047... 27 9.6
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 493 INDFVRSATHEAIDEIVTPSELDG-VLLVLIDALYFKGNWRVLFPYENT 636
IN +V AT++ I EI+ + G LVL++A+YFKG W FP E T
Sbjct: 128 INKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERT 176
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +1
Query: 493 INDFVRSATHEAIDEIVTPSELDGVL-LVLIDALYFKGNWRVLFPYENT 636
IN++V AT++ I EI+ + + LVL++A+YFKG W FP E+T
Sbjct: 90 INEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPREST 138
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 40.7 bits (91), Expect = 0.001
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Frame = +1
Query: 178 ESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLR-----LHPHVCFNRKYFNILKEIGK 342
+ + VS LS A L+ L GA ET D+I L H + + ++ + G
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 343 ND---GGVLEHSGAMFIDSKINVYEQFKQDVQNTGVSEVNELPWXXXXXXXXX-INDFVR 510
D G + + +++D+ + + + + V + +E + + IN++
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 511 SATHEAIDEIVTPSELDGVL-LVLIDALYFKGNWRVLFPYENT 636
SAT I + + +D VL +ALYFKG+W F +T
Sbjct: 151 SATAGRIKDFLPKDAVDRATPAVLGNALYFKGDWESKFDARST 193
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 493 INDFVRSATHEAIDEIVTPSELD-GVLLVLIDALYFKGNWRVLFPYENT 636
IN +V AT++ I EI+ + LVL++A+YFKG W FP +T
Sbjct: 140 INKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSST 188
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 493 INDFVRSATHEAIDEIVTPSELD-GVLLVLIDALYFKGNWRVLFPYENTE 639
+N +V T I I TP ++ LVL +ALYFKG W F TE
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTE 518
Score = 36.7 bits (81), Expect = 0.016
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 493 INDFVRSATHEAIDEIVTPSELDGVL-LVLIDALYFKGNWRVLFPYENTE 639
+N +V T I EI+ P +D LVL +ALYFKG W F T+
Sbjct: 217 VNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTK 266
>01_01_1152 + 9170628-9171899
Length = 423
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 493 INDFVRSATHEAIDEIVTPSELDG-VLLVLIDALYFKGNWRVLF 621
+N FV AT I +++ P+ +D ++VL +A++FKG W + F
Sbjct: 163 VNAFVSDATEGLIRDVLPPNSVDSSTVVVLANAVHFKGTWSLPF 206
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 493 INDFVRSATHEAIDEIVTPSELDGVL-LVLIDALYFKGNWRVLFPYENTE 639
+N +V T I EI+ P +D LVL +ALYFKG W F T+
Sbjct: 9 VNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTK 58
>11_01_0771 + 6453130-6454488
Length = 452
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 493 INDFVRSATHEAIDEIVTPSELDG-VLLVLIDALYFKGNWRVLFPYENTE 639
IN + R AT + I +++ P + +VL +A+YFKG W F +TE
Sbjct: 177 INAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNESDTE 226
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 493 INDFVRSATHEAIDEIVTP-SELDGVLLVLIDALYFKGNWRVLFPYENTES 642
IN +V AT I E++ P S+ V+ +A+YFKG W L P++ +++
Sbjct: 62 INAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEW--LAPFDKSDT 110
>04_03_0991 - 21500143-21500799,21500834-21501172
Length = 331
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +1
Query: 157 TRVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLRLHPHVCFNRKYFNILKEI 336
T V ++ H + GL A + ++F + +TF VL V F + F KE+
Sbjct: 154 TVVVPPSDLHRHLGGLLATGEGADVTFEVSGKTFAAHRLVLAARSPV-FRAELFGPSKEL 212
Query: 337 GKNDGGVLEHSGAMFIDSKINVYE 408
G GG ++H+ D + +E
Sbjct: 213 GATTGGAVDHTAIRIDDMEARDFE 236
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +1
Query: 322 ILKEIGKNDGGVLEHSGAMFIDSKINVYEQFKQDVQNTGVSEVNELPWXXXXXXX-XXIN 498
+L++ + G L +G ++ D+ ++ +F N S + + IN
Sbjct: 88 VLRDRSTSGGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQIN 147
Query: 499 DFVRSATHEAIDEIVTPSELD-GVLLVLIDALYFKGNW 609
+V+ +T + ++ +D LVL ALYF+G W
Sbjct: 148 SWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRW 185
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 434 VFWTSCLNCS*TFIFESMNIAPECSKTPPSFLPI 333
VFWT C +C F++ N CS F I
Sbjct: 167 VFWTICPHCQKRFLYYQRNFLARCSDCGKRFFAI 200
>05_03_0488 - 14651532-14652265,14652404-14653988
Length = 772
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 379 FIDSKINVYEQFK-QDVQNTGVSEVNELPW 465
F+D+ +N E FK QDV + ++ +N +PW
Sbjct: 387 FVDAILNGLEVFKLQDVNKSNLAGMNPIPW 416
>08_01_0095 + 686182-686184,686440-686682,686755-687228
Length = 239
Score = 28.7 bits (61), Expect = 4.1
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +1
Query: 82 YGKCNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGL-SAWAILSTLSFGAAEETF 258
Y YT QF L D A +TR+ + FVV+G+ S I + L+
Sbjct: 58 YNTRRRYTPRQFADL-LADRYAAQLTRLYKAGARKFVVAGVGSMGCIPNVLAQSVESRCS 116
Query: 259 DEINTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEHSGAMFIDS 390
E++ ++ V FN N+ +G+ DGG L + +F+D+
Sbjct: 117 PEVDALV-----VPFNA---NVRAMLGRLDGGGLPGASLVFLDN 152
>06_03_0629 +
22920206-22920291,22920430-22920527,22920657-22920796,
22921596-22921626,22922025-22922128,22922439-22922560,
22922651-22923050,22923245-22923268
Length = 334
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 132 VRLQRWTSDESQSRNGKPFRRIWTISMGNSI 224
+ ++ W+S S S P R+ W +S+ N++
Sbjct: 61 IMIKLWSSGGSSSAGRAPLRKYWGVSITNTV 91
>05_04_0193 +
18939869-18939988,18940714-18941012,18941078-18941186,
18941874-18941999,18942178-18942218,18942614-18942744,
18943218-18943291,18944215-18944450,18944543-18944863,
18945023-18945086
Length = 506
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 526 AIDEIVTPSEL-DGVLLVLIDALYFKGNWRVLFPYENTE 639
A+ EI EL D ++ LIDA +KGN ++F + T+
Sbjct: 63 ALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETD 101
>03_06_0120 +
31804301-31804412,31804525-31804631,31804714-31804756,
31806069-31806187
Length = 126
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 281 LSTVLISSKVSSA-APNDSVDRIAHADSPDTTKWLSVS*LTLVTSPALKSYN 129
L ++ +K ++A A + AH D+ +T KW ++ +VT L +YN
Sbjct: 10 LRSLAARAKATAAPAARRRMSSSAHDDAHETAKWEKITYAGIVTCTLLAAYN 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,091
Number of Sequences: 37544
Number of extensions: 276577
Number of successful extensions: 600
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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