Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P18
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      41   7e-04
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      39   0.004
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      35   0.065
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)                  31   0.80 
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)               28   5.6  
SB_51515| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)                   27   9.8  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
 Frame = +1

Query: 238 GAAEETFDEINTVLRLHPHVCFNRKYFNILKEIG---KNDGGVLEHSGA--MFIDSKINV 402
           GA  ET DE+ T +    H           KE+     N G   E S A  +F+    ++
Sbjct: 5   GARGETADEMATAMHWEGHKPMLPSKHQEHKELSVALNNPGATNEMSIANNLFLQKDFSI 64

Query: 403 YEQFKQDVQNTGVSEVNELPWXXXXXXXXX-INDFVRSATHEAIDEIVTPSELDGVL-LV 576
            ++F    Q    ++++ + +          +N +V   T + I +++ P   + +  L 
Sbjct: 65  LKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICDLIAPGVFNMLTRLT 124

Query: 577 LIDALYFKGNWRVLFPYENTES 642
           L++A+YFKG W   F  E++ S
Sbjct: 125 LVNAIYFKGMWDKPFKKEHSHS 146


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 4/162 (2%)
 Frame = +1

Query: 169 QETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLRLHPHVCFNRKYFNILKEIG--K 342
           Q+ +++   S  S    L+    GA   T  ++         V    K+ + L+ +    
Sbjct: 24  QDGQTNLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDV--PEKFHDFLQALNASN 81

Query: 343 NDGGVLEHSGAMFIDSKINVYEQFKQDVQNTGVSEVNELPWXXXXXXXX-XINDFVRSAT 519
           +DG  +  +  +F      + E+FK+  + +  +E+  + +          +N +V   T
Sbjct: 82  SDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKT 141

Query: 520 HEAIDEIVTPSELD-GVLLVLIDALYFKGNWRVLFPYENTES 642
            + I  ++     +   +L L++A+YFKG+W   F    T+S
Sbjct: 142 KDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQS 183


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 493 INDFVRSATHEAIDEIVTPSELDGVL-LVLIDALYFKGNWRVLFPYENT 636
           +N +V   T   I E++    ++ +  L++++A+YFKG W+  F  ENT
Sbjct: 101 VNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENT 149


>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
          Length = 885

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 398 FIFESMNIAPECSKTPPSFLPISFKILKYFLLK---HTCGCS 282
           F  E+   A  C K  P+FL  S+K+L YF  K   + CG S
Sbjct: 652 FANEAEEKAQHCLKAEPAFLEKSWKVLDYFSFKSVRNLCGAS 693


>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
          Length = 511

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 329 FKILKYFLLKHTCGC 285
           +++++YFLL H CGC
Sbjct: 166 WRLMRYFLLTHLCGC 180


>SB_51515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 329 FKILKYFLLKHTCGCSLSTVLISSKVSSAA 240
           +++++YFLL H CG S  T    S + S A
Sbjct: 98  WRLMRYFLLTHLCGISHRTWCTLSTICSDA 127


>SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)
          Length = 349

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 329 FKILKYFLLKHTCGCSLSTVL 267
           +++++YFLL H CG   S +L
Sbjct: 62  WRLMRYFLLTHLCGLESSEIL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,108,753
Number of Sequences: 59808
Number of extensions: 329767
Number of successful extensions: 833
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)