Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P17
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1341 - 36434098-36436080                                         32   0.38 
11_04_0320 + 16354122-16354226,16354652-16356859                       29   2.7  
07_03_1633 - 28281825-28284005                                         28   4.6  
04_04_0721 - 27549212-27549646,27549739-27549962,27550074-275502...    28   4.6  
03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411           27   8.1  

>01_06_1341 - 36434098-36436080
          Length = 660

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 24/63 (38%), Positives = 31/63 (49%)
 Frame = +1

Query: 220 IVIGRYVSAARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYF 399
           I++G     A +   L N GRGEVIR+  N  L E   +V  +  K   + EI IVRD  
Sbjct: 588 ILLGHSEKLA-VAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAER-EI-IVRDVN 644

Query: 400 PIH 408
             H
Sbjct: 645 RFH 647


>11_04_0320 + 16354122-16354226,16354652-16356859
          Length = 770

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +1

Query: 244 AARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYFPIHFRWIL 423
           AA   +ELK +G  E   L++N  ++  +   V    KL+++ ++GI+RD       WI 
Sbjct: 584 AADKLLELKPKGI-ETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDR-----SWIT 637

Query: 424 LGEQVKFINLRD 459
           + ++V F    D
Sbjct: 638 IKDKVYFFRAND 649


>07_03_1633 - 28281825-28284005
          Length = 726

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 25  SRSALETVRLRVRSAWTGIYERNARIESYKMILSI 129
           SR A      R   AWT I   NAR  SY  ++S+
Sbjct: 486 SRKAFHETEQRSLIAWTAIISANARHGSYGAVMSL 520


>04_04_0721 -
           27549212-27549646,27549739-27549962,27550074-27550227,
           27568477-27568821,27568899-27569152,27569257-27569383
          Length = 512

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 576 PPMRDYFPRHSITLPFVFVTVRTSIAISVCTPFE 475
           P +R YF     T  FVF+ V ++I+  + TP E
Sbjct: 267 PALRAYFAEFFSTFLFVFIAVGSTISARMLTPDE 300


>03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411
          Length = 1311

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +1

Query: 238 VSAARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYFPI 405
           V+  RI+ E + +G  E +  VV+ L     RNVV       RKGE+ +V DY P+
Sbjct: 379 VAVKRISHESR-QGMKEFVAEVVS-LGRLRHRNVVQLLDYCRRKGELLLVYDYMPM 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,090
Number of Sequences: 37544
Number of extensions: 254966
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)