Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P16
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    29   0.44 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.1  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   5.4  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.4  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    25   9.4  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = -2

Query: 642 TESRMSKVSHAAGPPEAVTEERICXRDSTSMESALPSRPAAPIAFNSTPCTTNRKRRS-P 466
           +++ M  VSH   PP+ +T  ++  ++     SA P +P +P A N TP +++   ++ P
Sbjct: 221 SKNTMRAVSHLENPPKDITLPKLNVKN-----SAWPLQPYSPPA-NETPASSSSSAKARP 274

Query: 465 GCTPTSDSQ-PSSSCD 421
              P   S  P+SS +
Sbjct: 275 VSVPDMSSPVPASSVE 290


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = -2

Query: 645 STESRMSKVSHAAGPPEAVTEERICXRDSTSMESALPSRPAAPIAFNSTPCTTNRKRRSP 466
           S+ S  S  S ++    + +        S+S  S+  S  ++ +   S+  +++    S 
Sbjct: 165 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSS 224

Query: 465 GCTPTSDSQPSSSCDAFIS 409
             + +S S+PSSS  +FI+
Sbjct: 225 SSSSSSSSRPSSS-SSFIT 242


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -2

Query: 636 SRMSKVSHAAGPPEAVTEERICXRDSTSMESALPSRPA-APIAFNSTPCTT-NRKRRSPG 463
           S  + V+  A PP AVT E+    + TS+  ++   PA    +F        N+ RR   
Sbjct: 170 SNANAVNGTANPPYAVTSEKDPQTNGTSVFQSITCMPAYRSYSFEELRLQDYNQGRRFGN 229

Query: 462 CTPTSDSQPSSSCDAF 415
            + T+ +    S  AF
Sbjct: 230 ASSTNTTSAFGSTPAF 245


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 555 SMESALPSRPAAPIAFNSTPCTTNRKRRSPGCTPTSDSQPSSSCDAFIS 409
           S   +L S  ++     S   ++N++  SPG +P++DSQ  ++    IS
Sbjct: 86  SSNPSLISSGSSQTGSPSQSLSSNKEPSSPGISPSNDSQSQNTNHTSIS 134


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = -2

Query: 600 PEAVTEERICXRDSTSMESALPSRPAAPIAFNSTPCTTNRKRRSPGCTPTSDSQPSSSCD 421
           P  V E++   +      S LPS  ++P+   S     N K+ +        S PSS   
Sbjct: 180 PGLVCEQKTFYQHQFRPFSNLPSNKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239

Query: 420 AFIS 409
           + IS
Sbjct: 240 SNIS 243


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 187 TPVYPEKSRGHSQLHWHST 131
           T ++ + SR HS++H HST
Sbjct: 313 TTLFSDDSRFHSKIHTHST 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,724
Number of Sequences: 5004
Number of extensions: 39888
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)