Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P16
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    34   0.094
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro...    33   0.16 
At1g15970.1 68414.m01916 methyladenine glycosylase family protei...    30   1.5  
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    28   4.7  
At3g09000.1 68416.m01053 proline-rich family protein                   28   6.1  
At1g67040.1 68414.m07624 expressed protein ; expression supporte...    28   6.1  
At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote...    27   8.1  

>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 504 STPCTTNRKRRSPGCTPTSDSQPSSSCDAFISWSCRSGSCAPLFKYSLVC 355
           S P    +   +PG +P S  +P ++CD + S    S +C  L+KY   C
Sbjct: 350 SYPIKKGQNPPNPGPSPPSPIKPPTTCDKYFSCP-ESNTCCCLYKYGKYC 398


>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
           protease identical to SP|P43297 Cysteine proteinase
           RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
           thiol protease RD21A SP:P43297 from [Arabidopsis
           thaliana]
          Length = 462

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 504 STPCTTNRKRRSPGCTPTSDSQPSSSCDAFISWSC-RSGSCAPLFKYSLVC 355
           S P        +PG +P S  +P + CD++  ++C  S +C  LF+Y   C
Sbjct: 349 SYPIKNGENPPNPGPSPPSPIKPPTQCDSY--YTCPESNTCCCLFEYGKYC 397


>At1g15970.1 68414.m01916 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 352

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = -2

Query: 576 ICXRDSTSMESALPSRPAAPIAFNSTPCTTNRKRRSPGCTPTSDSQPSSSCDAFISWSCR 397
           I  +D  + +   P+ P   +   S+ C++  ++ S   T +  S  SSSC++       
Sbjct: 47  IDSKDEKAKKPTTPASPRTTLKQCSSLCSSILRKNSASMTASYSSDASSSCESSPLSVAS 106

Query: 396 SGSCAPLFKYS 364
           S SC  + + S
Sbjct: 107 SSSCKKVVRRS 117


>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 23/70 (32%), Positives = 30/70 (42%)
 Frame = -2

Query: 540 LPSRPAAPIAFNSTPCTTNRKRRSPGCTPTSDSQPSSSCDAFISWSCRSGSCAPLFKYSL 361
           +PSR  +P   +S   TT     +   T T+ S  SSS  A +  S R  S +PL   S 
Sbjct: 36  VPSRYLSPSPSHSVSSTTTTTTTT---TTTTSSSSSSSSSAILRTSKRYPSPSPLLSRST 92

Query: 360 VCHLLNSTAT 331
                NS  T
Sbjct: 93  TNSASNSIKT 102


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = -2

Query: 567 RDSTSMESALPSRPAAPIAFNSTPCT------TNRKRRSPGCTPTS 448
           R S+S  S   SRPA P   ++TP T      T R   S   TPTS
Sbjct: 146 RPSSSGSSRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTS 191


>At1g67040.1 68414.m07624 expressed protein ; expression supported
           by MPSS
          Length = 826

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
 Frame = -2

Query: 603 PPEAVTEERICXRDSTSMESALPSRPAAPIAFNSTPCTTNRKRRSPGCTPTSDSQPSSSC 424
           PPEA +      R  +S  +A+ S+    IA N    + +   +SP     SD       
Sbjct: 369 PPEARSFALPSKRSCSSPANAINSKEKDFIAMNRGSTSRSHHSKSPVKFENSDLNLQRKS 428

Query: 423 DAFISWSC-RSGSCAPLFKYSLVC 355
              +  SC RSG   P  K  L C
Sbjct: 429 HTRVEESCNRSGLSTPGRKRRLAC 452


>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
           kinase, putative similar to Z. mays leucine-rich repeat
           transmembrane protein kinase LRRTPK 1, GenBank accession
           number AF023164
          Length = 776

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/66 (30%), Positives = 25/66 (37%)
 Frame = -2

Query: 624 KVSHAAGPPEAVTEERICXRDSTSMESALPSRPAAPIAFNSTPCTTNRKRRSPGCTPTSD 445
           K  H   P  A          S S  S  P++PA    F+  P   N + R       SD
Sbjct: 239 KFLHEGNPFNATMINSTSTAPSLS-PSLSPTKPAPTRPFSGVPPPPNERNRGKVADGPSD 297

Query: 444 SQPSSS 427
           S+ SSS
Sbjct: 298 SEGSSS 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,078,719
Number of Sequences: 28952
Number of extensions: 220571
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)