Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P15
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    26   3.8  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   6.7  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   6.7  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 108 VTPPVIIPILANSAAPAETSDSDAASLK 191
           VT P++IP+LAN   P E   S  A ++
Sbjct: 86  VTRPLLIPVLANLNVPHEVRVSSLARVQ 113


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 393 WLFTDNKKNVTCIVVQFAAQLNVTYPKVAENVTSLAYVLVN 515
           WL + N K V+C++  F +++   +P      T + Y L+N
Sbjct: 40  WLRSKNFK-VSCLLKHFNSKIINDHPLSGSCYTDIGYALIN 79


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 452 LSCELHNYTCDIFLVIR 402
           LSC  H+Y+ D+FL+IR
Sbjct: 243 LSCWDHHYSDDVFLLIR 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,434
Number of Sequences: 5004
Number of extensions: 29661
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)