Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P15
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0297 - 32924162-32924605 31 0.98
01_05_0455 + 22387512-22387629,22388344-22388852 30 1.3
10_01_0158 + 1798370-1798381,1798472-1798840,1799031-1799564 29 2.3
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 29 3.0
01_07_0069 + 40869496-40869535,40869627-40869663,40870241-408703... 29 4.0
07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470 28 5.2
12_02_0191 + 15178717-15179045,15179147-15179546,15179624-151796... 28 6.9
05_01_0239 - 1785699-1785980,1786061-1786284,1786380-1786526,178... 28 6.9
10_06_0036 - 9914606-9915561,9916287-9916368 27 9.2
05_04_0075 - 17690097-17690378,17691079-17691216,17692195-176925... 27 9.2
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 27 9.2
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 27 9.2
>03_06_0297 - 32924162-32924605
Length = 147
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 51 GEPITAPPKPEIIDVPRLSVTPPVIIPILANSAAPAE 161
G I +PP PE+ DVPR PP P L P E
Sbjct: 94 GPSIPSPPMPEVPDVPRNPDVPPPKPPELDPPRPPPE 130
>01_05_0455 + 22387512-22387629,22388344-22388852
Length = 208
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 63 TAPPKPEIIDVP-RLSVTPPVIIPILANSAAPA 158
T PP P + + RLS + V++P+L+ AAPA
Sbjct: 3 TTPPSPSFLFLQIRLSSSSVVLLPVLSGGAAPA 35
>10_01_0158 + 1798370-1798381,1798472-1798840,1799031-1799564
Length = 304
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 119 GWCHR*ARYIDDLRFWWRCDRLTKASFV 36
GWC + I D FWWR D+ K V
Sbjct: 97 GWCRQNRFNIVDFIFWWRHDKKNKLFLV 124
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 69 PPKPEIIDV--PRLSVTPPVIIPILA-NSAAPAETSDSDAASLKP 194
PP P I+ PRLSV PP+ +P + N + P + A P
Sbjct: 519 PPLPNIMSAGFPRLSVPPPLPLPTQSQNQSQPQQQQSPQAPQQSP 563
>01_07_0069 +
40869496-40869535,40869627-40869663,40870241-40870387,
40872360-40872405,40872580-40872846,40873151-40873540
Length = 308
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 75 KPEIIDVPRLSVTPPVIIPILANSAAPAETSDSD 176
K +I D +++ PP I P+ A+ + A DSD
Sbjct: 83 KTDIFDTKEMAIAPPRIQPVSAHLHSSASPKDSD 116
>07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470
Length = 445
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 81 EIIDVPRLSVTPPVIIPILANSAAPAETSDSDAASLKP 194
E DVPR V ++ + N +PA TS D S KP
Sbjct: 315 EASDVPRTGVAAKLMKCLNENGISPASTSKLDVHSQKP 352
>12_02_0191 +
15178717-15179045,15179147-15179546,15179624-15179668,
15180506-15180571,15181829-15181890,15182161-15182326,
15183384-15183507,15184177-15184283,15184395-15184505
Length = 469
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 488 HIFGNFRVGNVELSCELHNYTCDIFL 411
H+F F V N ELSC+++ + D+ L
Sbjct: 352 HMFAQFYVENGELSCQMYQRSADMGL 377
>05_01_0239 -
1785699-1785980,1786061-1786284,1786380-1786526,
1786667-1786775,1786880-1786981,1787090-1787164,
1787277-1787453,1787534-1787623,1787717-1787844,
1787909-1788356
Length = 593
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 48 LGEPITAPPKPEIIDVPRLSVTPPVIIP 131
L P T+PP P + +P V PP ++P
Sbjct: 7 LSPPPTSPPGPALSRLPCRRVAPPPVLP 34
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 57 PITAPPKPEIIDVPRLSVTPPVIIPILANSAA 152
P APP ++ VP + +PP+ +P AA
Sbjct: 195 PAAAPPSTPVVVVPAPATSPPMSMPATPPEAA 226
>05_04_0075 -
17690097-17690378,17691079-17691216,17692195-17692552,
17692720-17692805
Length = 287
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 115 GVTDRRGTSMISGFGGAVIGSPR 47
G ++RG + GFGGA IG+ R
Sbjct: 8 GRREKRGAGCVLGFGGAYIGTGR 30
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = +3
Query: 33 FHKGGLGEPITAPPKPEIIDVPRLSVTPPVIIPILANSAAPAETSDSDAASL 188
F P T+PP P P S P + NS+ P SD SL
Sbjct: 44 FSTSASSSPCTSPPAPPETSPPNTSTPAPPAPDVPENSSPPDYDLCSDRCSL 95
>01_07_0084 +
40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Frame = +3
Query: 57 PITAPPKPEIIDVPRLSVTPP-VIIPIL------ANSAAPAETSDSDAASLKP 194
PI PP + ++ +S PP +++P++ +S +PA + ++ A+ +P
Sbjct: 706 PIEQPPDADAMETDSVSTAPPNIVVPVVDKQIGSTSSVSPAVAAGANGATSEP 758
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,157,055
Number of Sequences: 37544
Number of extensions: 231779
Number of successful extensions: 911
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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