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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P15
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)                     31   1.0  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)                 29   2.3  
SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43)             29   4.1  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   27   9.4  

>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
          Length = 284

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 408 NKKNVTCIVVQFAAQLNVTY-PKVAENVTSLAYVLVNVPANATV---SNGSCDGLNQWLT 575
           +K+ + C++ Q +A  NVTY  K A N T      V++P N ++   SN  C   N   T
Sbjct: 106 DKQGMFCLLAQLSATFNVTYLKKKAGNKTEEMSSTVSMPFNKSLVDTSNSKCSEENGIST 165

Query: 576 INWTAP 593
           +    P
Sbjct: 166 LEVVWP 171


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 57  PITAPPKPEIIDVPRLSVTPPVIIPILANSAAP 155
           P+T PP P +I  P+ S+ PP +I  L   + P
Sbjct: 389 PVTVPPPP-LIPPPQASIPPPTMIQTLPPPSVP 420


>SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)
          Length = 399

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +3

Query: 450 QLNVTYPKVAENVTSLAYVLVNVPANATVSNGSCDGL 560
           ++   YP VAEN + L++   ++ +N+TV+ G+C GL
Sbjct: 313 RVRTLYPCVAENTSELSFDAGSIISNSTVA-GACLGL 348


>SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43)
          Length = 360

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 62  HSATKTGDHRCTAPICDTTRHYTDLGKQCCT 154
           H AT    + CTA IC  T  YT  GK C T
Sbjct: 117 HGATCLAQYPCTAYICSCTPGYT--GKHCET 145


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 57  PITAPPKPEIIDVPRLSVTPPVIIPILANSAAPAET 164
           P   PP+PE    P  ++TPP + P L  +  P ET
Sbjct: 616 PSRVPPQPETAPKPFPNITPPEVRPSLPGT--PPET 649


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 69  PPKPEIIDVPRLSVTPPVII--PILANSAAPAETSDSDAAS 185
           P +PEI   P    TP V I  P    + AP+ET+DSD  +
Sbjct: 135 PVEPEITSKPP-EKTPSVAIDMPQRLENTAPSETNDSDVVN 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,918
Number of Sequences: 59808
Number of extensions: 264890
Number of successful extensions: 1202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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