BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0001_P15 (623 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55) 31 1.0 SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014) 29 2.3 SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43) 29 4.1 SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 27 9.4 >SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55) Length = 284 Score = 30.7 bits (66), Expect = 1.0 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Frame = +3 Query: 408 NKKNVTCIVVQFAAQLNVTY-PKVAENVTSLAYVLVNVPANATV---SNGSCDGLNQWLT 575 +K+ + C++ Q +A NVTY K A N T V++P N ++ SN C N T Sbjct: 106 DKQGMFCLLAQLSATFNVTYLKKKAGNKTEEMSSTVSMPFNKSLVDTSNSKCSEENGIST 165 Query: 576 INWTAP 593 + P Sbjct: 166 LEVVWP 171 >SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2388 Score = 30.3 bits (65), Expect = 1.3 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 57 PITAPPKPEIIDVPRLSVTPPVIIPILANSAAP 155 P+T PP P +I P+ S+ PP +I L + P Sbjct: 389 PVTVPPPP-LIPPPQASIPPPTMIQTLPPPSVP 420 >SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014) Length = 399 Score = 29.5 bits (63), Expect = 2.3 Identities = 14/37 (37%), Positives = 25/37 (67%) Frame = +3 Query: 450 QLNVTYPKVAENVTSLAYVLVNVPANATVSNGSCDGL 560 ++ YP VAEN + L++ ++ +N+TV+ G+C GL Sbjct: 313 RVRTLYPCVAENTSELSFDAGSIISNSTVA-GACLGL 348 >SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43) Length = 360 Score = 28.7 bits (61), Expect = 4.1 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +2 Query: 62 HSATKTGDHRCTAPICDTTRHYTDLGKQCCT 154 H AT + CTA IC T YT GK C T Sbjct: 117 HGATCLAQYPCTAYICSCTPGYT--GKHCET 145 >SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4856 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 Query: 57 PITAPPKPEIIDVPRLSVTPPVIIPILANSAAPAET 164 P PP+PE P ++TPP + P L + P ET Sbjct: 616 PSRVPPQPETAPKPFPNITPPEVRPSLPGT--PPET 649 >SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) Length = 787 Score = 27.5 bits (58), Expect = 9.4 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +3 Query: 69 PPKPEIIDVPRLSVTPPVII--PILANSAAPAETSDSDAAS 185 P +PEI P TP V I P + AP+ET+DSD + Sbjct: 135 PVEPEITSKPP-EKTPSVAIDMPQRLENTAPSETNDSDVVN 174 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,821,918 Number of Sequences: 59808 Number of extensions: 264890 Number of successful extensions: 1202 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1200 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1548368000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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