Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P15
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    27   8.2  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    27   8.2  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 42  GGLGEPITAPPKPEIIDVPRLSVTPPVIIPILANSAAPAETS 167
           GG  +P T        D P +   PPV++P+LA S  P +T+
Sbjct: 262 GGDPKPATMKESNTTAD-PVVLTNPPVVVPVLATSEEPNDTT 302


>Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical
           protein F28B1.2 protein.
          Length = 973

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = -1

Query: 482 FGNFRVGNVELSCELHN-----YTCDIFLVIRE 399
           FGN ++G+  ++C+ H      YTC +F  IR+
Sbjct: 202 FGNLKLGDASITCKPHTDNKLYYTCGMFKSIRK 234


>U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical
           protein T26A8.4 protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 33  FHKGGLGEPITAPPKPEIIDVPRLSV-TPPVI 125
           F++G   E +   P P  I+ PRLS  TPP++
Sbjct: 363 FNQGPRPEQVQGLPPPRTIEPPRLSTQTPPIM 394


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 96  PRLSVTPPVIIPILANSAAPAETS 167
           P   VTPPV+ P  + S AP E S
Sbjct: 646 PSTPVTPPVLRPAFSESKAPQEPS 669


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 96  PRLSVTPPVIIPILANSAAPAETS 167
           P   VTPPV+ P  + S AP E S
Sbjct: 548 PSTPVTPPVLRPAFSESKAPQEPS 571


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 72  PKPEIIDVPRLSVTPPVIIPILANSAAPAETSDSDAASLK 191
           PKP+   VP   V+PPVI+PI  +S  PA   +  + +++
Sbjct: 699 PKPD--PVPAKPVSPPVIVPI--DSIVPAPVVEDKSRTVE 734


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,736,397
Number of Sequences: 27780
Number of extensions: 184515
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)