Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P15
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45500.1 68416.m04913 hypothetical protein                          33   0.20 
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t...    29   2.5  
At4g34570.1 68417.m04912 bifunctional dihydrofolate reductase-th...    29   3.3  
At2g25640.1 68415.m03073 transcription elongation factor-related...    28   4.4  
At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote...    28   5.8  

>At3g45500.1 68416.m04913 hypothetical protein 
          Length = 201

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 297 DSVVLEMDLVALETGSVEAQGVKSKFPLLV 208
           D  VLE +L+AL+ G +EA G KS F + V
Sbjct: 54  DITVLEAELMALKRGLIEAAGFKSSFTIFV 83


>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
           carteri f. nagariensis GP|6523547; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 375

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 57  PITAPPKPEIIDVPRLSVTPPVIIP-ILANSAAPAETSDSDAASLKP 194
           P  +PP P I   P L+ TPP + P  L    +P +T+     ++ P
Sbjct: 120 PPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITP 166


>At4g34570.1 68417.m04912 bifunctional dihydrofolate
           reductase-thymidylate synthase 2 / DHFR-TS (THY-2)
           identical to SP|Q05763
          Length = 565

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 488 HIFGNFRVGNVELSCELHNYTCDIFL 411
           H+F  F V N ELSC+++  + D+ L
Sbjct: 448 HMFAQFYVANGELSCQMYQRSADMGL 473


>At2g25640.1 68415.m03073 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 643

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 60  ITAPPKPEIIDVPRLSVTPPVIIPILANSAAPAETSDSDAASLKP 194
           +++P +   ID+    V    + P+ A +++P    D+D  S KP
Sbjct: 484 VSSPKESANIDLCTSPVKAEALSPLTAKASSPVNAEDADIVSSKP 528


>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: Eukaryotic
           protein kinase domain
          Length = 985

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 33  FHKGGLGEPITAPPKPEIIDVPRLSV 110
           F++GG+ E IT  PK +I+ VPR ++
Sbjct: 209 FYQGGIPEEITRLPKLKILWVPRATL 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,107,559
Number of Sequences: 28952
Number of extensions: 169527
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)