Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P14
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    32   0.40 
At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.92 
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   1.2  
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   2.1  
At3g62160.1 68416.m06984 transferase family protein low similari...    29   2.8  
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    29   3.7  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   4.9  
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    28   6.5  

>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = +1

Query: 52  YANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERY---GNLKHRR--GE 216
           Y + SN FL+ +   +L+ + +   F   + +F+  LP W+ S  Y    + K  +  GE
Sbjct: 145 YLDLSNNFLFGSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWYLKVLSFKSNKLSGE 204

Query: 217 IYYNFYQQLTTRYYFERLTNGLGSIPE 297
           ++ +     T  Y   R  +  GS+P+
Sbjct: 205 LHSSLLSLSTIEYIDLRANSLSGSLPD 231


>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 336 GIVTSLNRRVPREFRYGTQAVCKT 265
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 485 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 628
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 409 EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 528
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 333 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 244
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 2   QRLLIMEL*KRKSSMCITPTIPTLSFTIMK 91
           QR+ + E+ K+    C++P +PT +FT  K
Sbjct: 524 QRINLGEILKKSLGSCVSPLLPTKNFTYTK 553


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +1

Query: 487 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 585
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/59 (20%), Positives = 25/59 (42%)
 Frame = +1

Query: 199 KHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 375
           K  +G     F ++ +    F   + G   +    WY+P+  GY   + ++++P    P
Sbjct: 386 KTSKGRTSRTFGERTSDSVEFVIESKGCAVVGFHGWYAPLGAGYITALGAHFYPMPLPP 444


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,674
Number of Sequences: 28952
Number of extensions: 297879
Number of successful extensions: 938
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)