Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P13
(478 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 97 6e-25
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.49
SB_54669| Best HMM Match : Tropomodulin (HMM E-Value=0.09) 31 0.49
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_52802| Best HMM Match : Tropomodulin (HMM E-Value=0.11) 29 2.6
SB_49459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_21281| Best HMM Match : CRA_rpt (HMM E-Value=5.7) 28 4.5
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_55420| Best HMM Match : fn3 (HMM E-Value=0) 27 7.9
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 96.7 bits (230), Expect(2) = 6e-25
Identities = 44/63 (69%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +2
Query: 116 THNTMGD-IEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGH 292
T TM + + DT F +G+SGAS T+P QCS+LRKNG V++K RPCKIVEMSTSKTGKHGH
Sbjct: 582 TPKTMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGH 641
Query: 293 AKV 301
AKV
Sbjct: 642 AKV 644
Score = 34.7 bits (76), Expect(2) = 6e-25
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +2
Query: 401 QLTDISDDGYLTLMADNGYLREDLKI 478
++T+I +DGYL LM DNG R D+K+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKL 668
>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 995
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 230 TLRNRSYAGRSTAWEMLP-RHRSLRSRNVYLQCHPLCC 120
T++ S A R+ +EM P + R+ +S+ +YL C L C
Sbjct: 792 TVKFNSMASRAQRFEMAPFKFRNAKSKTIYLHCRVLVC 829
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 31.1 bits (67), Expect = 0.49
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 326 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGYLRE 466
NG Y CP N D + EDY + D YLT D G+ E
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGGFCAE 445
>SB_54669| Best HMM Match : Tropomodulin (HMM E-Value=0.09)
Length = 697
Score = 31.1 bits (67), Expect = 0.49
Identities = 22/65 (33%), Positives = 27/65 (41%)
Frame = -1
Query: 196 LHGKCCRGTGVSGLEMCIFNVTHCVVCTEFQLR*GVMKTTKITNNKRYTIKLRYLSTLTC 17
+ C TGVS L I N TH + G K+ N + KL+YLS C
Sbjct: 482 IEDSCIGATGVSALAEVIQNATHLDLSRNIIGTKGAEAIAKVIKN---SCKLKYLSINHC 538
Query: 16 DRRVL 2
D VL
Sbjct: 539 DIDVL 543
>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1471
Score = 30.7 bits (66), Expect = 0.64
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -1
Query: 196 LHGKCCRGTGVSGLEMCIFNVTHCVVCTEFQLR*GVMKTTKITNNKRYTIKLRYLSTLTC 17
+ C TGVS L I N TH + G K+ N + KL+YLS C
Sbjct: 1268 IEDSCIGATGVSALAKVIQNATHLDLSRNIIGTKGAKAIAKVIKN---SCKLKYLSINHC 1324
Query: 16 D 14
D
Sbjct: 1325 D 1325
>SB_52802| Best HMM Match : Tropomodulin (HMM E-Value=0.11)
Length = 768
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -1
Query: 196 LHGKCCRGTGVSGLEMCIFNVTHCVVCTEFQLR*GVMKTTKITNNKRYTIKLRYLSTLTC 17
+ C TGVS L I N TH + G +K+ N + KL+YL C
Sbjct: 451 IENSCIGATGVSALAKVIQNATHLDLSKNIIGTKGAKAISKVIEN---SCKLKYLRIDDC 507
Query: 16 DRRVL 2
+ VL
Sbjct: 508 NIDVL 512
>SB_49459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -1
Query: 196 LHGKCCRGTGVSGLEMCIFNVTHCVVCTEFQLR*GVMKTTKITNNKRYTIKLRYLSTLTC 17
+ C TGVS L I N TH + G +K+ N + KL+YL C
Sbjct: 628 IEDSCIGATGVSALAKVIQNATHLDLSRNIIGTKGAKAISKVIEN---SCKLKYLRIDHC 684
Query: 16 DRRVL 2
+ VL
Sbjct: 685 NIDVL 689
>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 287 RVCQFWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQ 138
R C++ R + R TLR Y R+ + + PRH +LR R L+
Sbjct: 119 RPCRYTLRPCRYTLRPRYCTLRPCRYTLRTCRYTLRPRHYTLRPRRYTLR 168
>SB_21281| Best HMM Match : CRA_rpt (HMM E-Value=5.7)
Length = 403
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 90 TPYRN*NSVHTTQWVTLKIH--ISRPETPVPRQHFPCSAPPCVRT 218
TP + S T L+IH +S T P ++F SAPPC+ T
Sbjct: 142 TPVESTASDITPLLTQLEIHSFLSFTSTVPPGEYFTSSAPPCLAT 186
>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 169 GVSGLEMCIFNVTHCVVCTEFQLR*GVMKTTKITNNKRYTIKLRYLSTLTC 17
G S + C T V+C++ +L V+ ++ NN+ Y ++ L +LTC
Sbjct: 50 GYSEVSKCKTGRTAGVICSQ-KLPDLVVNVEELGNNEHYRVEQMTLGSLTC 99
>SB_55420| Best HMM Match : fn3 (HMM E-Value=0)
Length = 789
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 266 WTSRQSCRGDSSTLRNRSYAGRST--AWEMLPRHRS 165
WTS+ + G + S+ S +W +LPRH+S
Sbjct: 110 WTSQTAPTGSPRVINASSFNSTSVVLSWNILPRHQS 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,548,855
Number of Sequences: 59808
Number of extensions: 337693
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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