Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P13
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   169   7e-43
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   157   4e-39
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    31   0.43 
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    31   0.43 
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical ...    27   7.0  
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  169 bits (412), Expect = 7e-43
 Identities = 81/114 (71%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
 Frame = +2

Query: 140 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 319
           +D HF TGDSGA+ATFP QCSALRKN  VM+K RPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 320 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGYLREDLKI 478
           IF  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++   ++DLK+
Sbjct: 67  IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKL 119


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  157 bits (381), Expect = 4e-39
 Identities = 74/114 (64%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
 Frame = +2

Query: 140 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 319
           ++  F++ +SGA+ATFP QCSALRKN  VM++ RPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 320 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGYLREDLKI 478
           IF  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++  L++DLK+
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKM 153


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -1

Query: 271 GSGHLDNLAGATLQHYETVLTQGGALHG--KCCRGTGVSGL-EMCIFNVTHCVVCTEFQL 101
           G G++ +    T Q  E ++ +   LH   +   G G S L +MC FN   C + TEF+L
Sbjct: 297 GYGNMTDQVAITTQAKEKMILKMSGLHPQRRAALGYGKSELIKMCSFNGQQCNIDTEFKL 356


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -1

Query: 271 GSGHLDNLAGATLQHYETVLTQGGALHG--KCCRGTGVSGL-EMCIFNVTHCVVCTEFQL 101
           G G++ +    T Q  E ++ +   LH   +   G G S L +MC FN   C + TEF+L
Sbjct: 297 GYGNMTDQVAITTQAKEKMILKMSGLHPQRRAALGYGKSELIKMCSFNGQQCNIDTEFKL 356


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 246 QGRLFNITKPFLRRAEHCMGNVAEAPESPVSKCVSSMSP 130
           Q R+    +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 337 QRRVRFCNEPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical
           protein C46E10.8 protein.
          Length = 172

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 149 HFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKV 301
           H ET DSGA A   +   A   +GF  +   P  ++   +S + + G  +V
Sbjct: 86  HLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRV 136


>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
           protein Y57A10A.15 protein.
          Length = 1072

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 323 FNGKKYEDICPSTHNMDVPHV 385
           F  K  E +CP  HN   PHV
Sbjct: 25  FERKTIETVCPRVHNYLFPHV 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,163,896
Number of Sequences: 27780
Number of extensions: 238952
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)