Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P13
         (478 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   173   7e-44
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   164   2e-41
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...   158   2e-39
At5g03140.1 68418.m00262 lectin protein kinase family protein co...    28   3.8  
At2g15860.1 68415.m01818 expressed protein  and genefinder             28   3.8  
At5g17190.1 68418.m02014 expressed protein similar to unknown pr...    27   8.7  
At3g19490.1 68416.m02470 sodium hydrogen antiporter, putative si...    27   8.7  
At1g19485.1 68414.m02427 AT hook motif-containing protein contai...    27   8.7  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  173 bits (420), Expect = 7e-44
 Identities = 72/113 (63%), Positives = 92/113 (81%)
 Frame = +2

Query: 140 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 319
           E+ HFE+ D+GAS T+P Q   +RKNG++++K+RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 320 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGYLREDLKI 478
           IF  KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG  ++DLK+
Sbjct: 64  IFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKL 116


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  164 bits (399), Expect = 2e-41
 Identities = 69/113 (61%), Positives = 89/113 (78%)
 Frame = +2

Query: 140 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 319
           ++ HFE+ D+GAS T+P Q   +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 320 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGYLREDLKI 478
           IF  KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG  ++DLK+
Sbjct: 64  IFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKL 116


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score =  158 bits (384), Expect = 2e-39
 Identities = 66/113 (58%), Positives = 88/113 (77%)
 Frame = +2

Query: 140 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 319
           ++ HFE  +SGAS T+P     +RK G +++K+RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 320 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGYLREDLKI 478
           IF  KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G  ++DLK+
Sbjct: 64  IFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKL 116


>At5g03140.1 68418.m00262 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 711

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 228 ITKPFLRRAEHCMGNVAEAPESPVSKCVSSMS 133
           +T+P +R     +   A+ PE P++K  SSMS
Sbjct: 635 VTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666


>At2g15860.1 68415.m01818 expressed protein  and genefinder
          Length = 512

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 301 NLSVTVFASFGSGHLDNLAGATLQHYETVLTQGGALHGKCCRGTGVSGL-EMCIFNVTHC 125
           N SV+  A   +G  + LAG  L   + +   GG L        GV  L EMC F VTH 
Sbjct: 328 NSSVSKAADMATGFTNALAG--LHVNDMIQRTGGRLES--LHSEGVHRLSEMCCFAVTHL 383

Query: 124 VV 119
           ++
Sbjct: 384 LI 385


>At5g17190.1 68418.m02014 expressed protein similar to unknown
           protein (gb|AAF26109.1)
          Length = 130

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 275 FWKWTSRQSCRGDSST 228
           +WK+ +R SC GDS T
Sbjct: 60  YWKYETRPSCDGDSCT 75


>At3g19490.1 68416.m02470 sodium hydrogen antiporter, putative
           similar to NhaD [Vibrio parahaemolyticus]
           gi|3123728|dbj|BAA25994; Na+/H+ aniporter (NhaD) family
           member, PMID:11500563
          Length = 576

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 375 TSMLWVEGQISSYFLPLNISMPTK*TLA*P 286
           T+MLW+ GQIS+     ++ +P+  +LA P
Sbjct: 301 TTMLWIHGQISTLPTMKDLFLPSVVSLAVP 330


>At1g19485.1 68414.m02427 AT hook motif-containing protein contains
           Pfam profile: PF00730 HhH-GPD superfamily base excision
           DNA repair protein; contains Pfam PF02178: AT hook
           motif; contains Pfam PF00400: WD domain, G-beta repeat
           (5 copies); contains Prosite PS00354: HMG-I and HMG-Y
           DNA-binding domain (A+T-hook)
          Length = 815

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 219 PFLRRAEHCMGNVAEAPESPVSKCVSSMSPIVLCV 115
           P +      +GNV   P S +S+ + ++  +VLC+
Sbjct: 318 PMILEYSEAVGNVPSKPSSGISEDIVALPRVVLCL 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,447,998
Number of Sequences: 28952
Number of extensions: 220280
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)