Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P12
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   2.1  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    25   2.8  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    24   6.5  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    24   8.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    24   8.6  

>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 238 KTVQTEKACDDVVAELRRRSIEHQALGFDCEWVTEH 345
           K + T   C D + EL  R      L + CE + +H
Sbjct: 818 KCISTGDGCSDFIKELLYRRPFSYTLSYVCEQIPDH 853


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 243 CFNI*IIENIHCITTCVFMFSHKICY 166
           CF+  + +N  C+T CV  FS ++ +
Sbjct: 385 CFSKMLAKNTVCVTNCVKSFSPRVSH 410


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 190 KYASRNAVDVFNYLNIKTVQTEKACDDVVAEL 285
           KYA ++ +     LN+K    EK C+ V+  L
Sbjct: 201 KYAKQDVITKARQLNMKIWSMEKLCNRVLKTL 232


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 132 KVNLIFIICFHSTNTYIKD*NGVNVTISKFYFIKCNVNQ-EH 10
           K++L  + CF   +  I +   +N++I + + I C++ Q EH
Sbjct: 757 KLDLQSLYCFEFCDGQIPNIQNINMSIFEAFPIACSLQQIEH 798


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = +2

Query: 203 VMQWMFSII*ILKQYKQKRLAMMLLLNYEEEVLNTKPLGLTV 328
           + +W+ +++ I+      ++   +L+N+  ++ NTK    TV
Sbjct: 678 INEWVKNVMYIVTHETDWKVVQYILINFTNQLRNTKMFTKTV 719


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,640
Number of Sequences: 5004
Number of extensions: 28800
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)