Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P12
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0481 + 24092574-24093962                                         29   1.1  
10_08_0668 + 19737875-19738073,19738157-19738304,19738315-197384...    28   2.6  
07_03_0175 - 14757109-14757311,14757537-14757615                       27   4.6  
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027...    27   4.6  

>11_06_0481 + 24092574-24093962
          Length = 462

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 126 LLYNSRCGSWLCVCNIFCEK 185
           LL  S C  WLCVCN+  ++
Sbjct: 141 LLLFSNCSRWLCVCNLATQR 160


>10_08_0668 +
           19737875-19738073,19738157-19738304,19738315-19738453,
           19738521-19738664,19739502-19739561,19740058-19740190,
           19740669-19740865
          Length = 339

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 341 SVTHSQSNPRAWCSILLLRNSATTS 267
           S++ +Q    AW S +LLRN+ TTS
Sbjct: 185 SLSAAQKEDMAWASYVLLRNTNTTS 209


>07_03_0175 - 14757109-14757311,14757537-14757615
          Length = 93

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 180 HKICYTRTTNCHSGCCKV 127
           +K CY   + C S CCK+
Sbjct: 72  YKTCYPNASECWSNCCKL 89


>05_07_0143 +
           28000038-28000211,28002217-28002230,28002713-28002788,
           28003304-28003865,28004476-28004761,28004848-28005118,
           28005478-28005633,28005871-28006368,28006809-28007093
          Length = 773

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -1

Query: 328 HSQTQGLGVQYFFFVIQQQHHRKPXXXXXXXXLNN*KHPLH 206
           HSQ  G G   F+    Q+HH+ P         N    P H
Sbjct: 724 HSQFGGHGYPAFYHSQSQEHHQNPAEGGLNGFQNAQSQPSH 764


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,438,658
Number of Sequences: 37544
Number of extensions: 164108
Number of successful extensions: 311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)