Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P12
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   2.1  
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)        27   3.6  
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)                       27   4.8  
SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)             27   4.8  

>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 217  HPLHYD-LRIYVFSQNMLHTHNQLPQRLL*SKSYIYHLFP*HEYIYQRLKRGQRYYQQVL 41
            HP HY  LR + F   +L  H+    R+L    + Y +   H + Y R+ R   ++ +VL
Sbjct: 1006 HPFHYRLLRHHSFHYRLLR-HHPFHYRVLRHHPFHYRVLRHHPF-YYRVLRHHPFHYRVL 1063

Query: 40   FH 35
             H
Sbjct: 1064 RH 1065


>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
          Length = 1136

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +1

Query: 181 RKHKYASRNAVDVFNYLNIKTVQTEKACDDVVAELRRRSIEHQALGFDCEWVTEHGPRKP 360
           RK K    +   V   L    +  +  C +  AELRR     ++L  DCE   E    K 
Sbjct: 232 RKDKSKPPSPALVLENLRHTMLDYQSRCSNATAELRRHRQVVESLSSDCEKYKELVMSKD 291

Query: 361 VAL 369
           +A+
Sbjct: 292 IAM 294


>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 675

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 216 IHCITTCVFMFSHKICYTRTTNC 148
           +HC  TC F +  +  Y  T NC
Sbjct: 121 LHCSVTCGFGYKRREVYCSTNNC 143


>SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)
          Length = 653

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 232 NIKTVQTEKACDDVVAELRRR-SIEHQALGFDCEWVTEHGP-RKPVAL 369
           N+  ++ ++ C+  +     +   + + +G DCEWV + G    PVAL
Sbjct: 43  NVYILEVQEECETKLKRYTNKYPFKMKFVGLDCEWVNKKGVLSHPVAL 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,192
Number of Sequences: 59808
Number of extensions: 213816
Number of successful extensions: 447
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)