Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P12
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.28 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.28 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   4.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   8.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 228 IIENIHCITTCVFMFSHKICYTRTTNCHSGCCKVNLIF 115
           +++N+H     +  F    C ++T      C KV+L+F
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLF 237


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 228 IIENIHCITTCVFMFSHKICYTRTTNCHSGCCKVNLIF 115
           +++N+H     +  F    C ++T      C KV+L+F
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLF 237


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = -1

Query: 199 LRIYVFSQNMLHTHN 155
           ++++V ++++LH HN
Sbjct: 403 IKVFVVNKDILHEHN 417


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 281 SATTSSQAFSVCTVLIFK*LKTSTALRLAYLCFLTKYVTH 162
           S +T +  ++V    +F    TS  L +A +C+ T +VTH
Sbjct: 134 SDSTMAIPYAVTKSAMFFFAATSL-LVVAEVCYFTAHVTH 172


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 233 ILKQYKQKRLAMMLLLNYEEE 295
           I++     +LA ++LLN++EE
Sbjct: 312 IVRSLVLDKLARIVLLNFQEE 332


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 346 HVPLPTHSQTQGLGVQ 299
           H  L  H Q  GLGVQ
Sbjct: 192 HGILSQHPQQHGLGVQ 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,264
Number of Sequences: 438
Number of extensions: 2183
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)