Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P12
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04370.1 68418.m00429 S-adenosyl-L-methionine:carboxyl methyl...    26   9.0  
At2g46900.1 68415.m05857 expressed protein contains Pfam profile...    26   9.0  

>At5g04370.1 68418.m00429 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 396

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 171 CYTRTTNCHSGCCKVNLIFIICFHSTNTYIKD*NGVNVTISKFYFI 34
           C  R  N     C +N +    F++T  +I+  NG+N+T  + YF+
Sbjct: 113 CQQRNQNPPEIDCCLNDLPSNDFNTTFKFIQFFNGMNITSKESYFV 158


>At2g46900.1 68415.m05857 expressed protein contains Pfam profile
           PF04910: Protein of unknown function, DUF654
          Length = 627

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 199 SRNAVDVFNYLNIKTVQTEKACDDVVAELRRRSIEHQA 312
           +R++++ F+ LN      E+  D+ +AE +    +HQ+
Sbjct: 35  ARSSINPFDLLNDGDEDPEEIDDETIAEKKNEDADHQS 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,885,715
Number of Sequences: 28952
Number of extensions: 142118
Number of successful extensions: 330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)