Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P11
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces... 34 0.012
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 30 0.20
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 29 0.27
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 2.5
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 26 2.5
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 26 2.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 4.4
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 25 5.8
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 7.6
>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 33.9 bits (74), Expect = 0.012
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 169 ELDAHINTICLPDAGEVFDDSKNCVANG---WGKNRFGKDDEFAVVLKKIELDMVEHSRC 339
++ H ++ L +GEV ++ KN G W + RFG + KI+ D +E +
Sbjct: 61 DVQVHYDSGKLTISGEVVNERKNESTEGNQRWSERRFGSFSRTITIPAKIDADRIEANFS 120
Query: 340 NDLLRYT 360
N LL T
Sbjct: 121 NGLLTVT 127
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 29.9 bits (64), Expect = 0.20
Identities = 29/88 (32%), Positives = 42/88 (47%)
Frame = +1
Query: 133 NDIAFLHLALPLELDAHINTICLPDAGEVFDDSKNCVANGWGKNRFGKDDEFAVVLKKIE 312
+DI A+P ELD+ + TI L + F V + + F + +E ++KKI
Sbjct: 2 SDIELHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFL-YNFSNF-QLNESPELVKKIS 59
Query: 313 LDMVEHSRCNDLLRYTELGARYNLHSSF 396
L V SR N +L LGA + H SF
Sbjct: 60 L--VSKSRVNRILAMPFLGAVFIHHGSF 85
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 0.27
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = -1
Query: 343 HYNGYAPPY----PVQSSLVLPQIHH-PYRNDSSPSRWRHSFYYHRRLRPRQAS 197
H N Y PPY PV +P HH PY +D+ R ++ P++A+
Sbjct: 185 HNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPYYYPQRAT 238
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 21 CKSW*VGYKDPDGASPSSGD 80
C+SW V Y D ++P+SG+
Sbjct: 459 CQSWLVWYPSEDASNPASGN 478
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 161 NAKWRKAMSFVSFLELK 111
N+ WR+A SF S+ ELK
Sbjct: 13 NSLWRRAASFTSYSELK 29
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 136 DIAFLHLALPLELDAHINTICLPDAGEVFDDSKNCVANGWGKNRFGKDDE 285
D+A LH P +D H + + P G + N + G+ N FG++ +
Sbjct: 63 DVAMLHKK-PSTVDTHDHPLANPPPGCPMHKASNENSTGFFSNLFGREKQ 111
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 4.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 346 DHYNGYAPPYPVQSSLVLPQIHHPYRNDSSPSRWRHSF 233
D N +APP PVQ +P + S+P R R SF
Sbjct: 1371 DSSNVHAPPPPVQPMNAMPSHNAVNARPSAPER-RDSF 1407
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 6 SYHHQCKSW*VGYKDPDGASPSSGDVFTKDLHSPWFQ-FEKAYK 134
+Y+ C+ + +G DGA G+++ D HS Q E YK
Sbjct: 247 AYNPLCEKFALGSTAQDGAYNRLGNLWIGDFHSETIQSLESHYK 290
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 24.6 bits (51), Expect = 7.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +3
Query: 99 HSPWFQFEKAYK*HRFPPFGVALRTRCAYKHYL 197
H W Q + A + ++PP + L TR +++
Sbjct: 1108 HECWAQVKSAVEEKQYPPIDLILNTRSTVDNFV 1140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,280
Number of Sequences: 5004
Number of extensions: 45092
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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