Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P11
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0964 + 12773450-12773467,12773578-12773820,12773934-127741... 32 0.26
07_03_1307 - 25649979-25650027,25650146-25650378 31 0.61
06_03_0269 - 18991203-18991307,18991448-18991525,18992724-189929... 29 1.4
07_03_1519 + 27390204-27390590,27390591-27390809,27392516-273929... 28 3.3
12_02_0299 - 17051570-17052474,17053542-17053755 27 7.5
05_03_0090 - 8330283-8330831 27 7.5
03_05_0256 - 22438888-22439259 27 7.5
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 27 7.5
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249... 27 10.0
08_02_1310 - 26037025-26038074 27 10.0
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 27 10.0
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 27 10.0
>03_02_0964 +
12773450-12773467,12773578-12773820,12773934-12774164,
12774286-12774378,12774463-12774650,12775601-12775794,
12775892-12776007
Length = 360
Score = 31.9 bits (69), Expect = 0.26
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +1
Query: 199 LPDAGEVFDDSKNCVANGWGKNRFGKDDEFAVVLKKIELDMVEHSRCNDLLRYTELGARY 378
+PD ++ D S G+G DDE A V ++D + + +R E+G R
Sbjct: 243 VPDLRDLNDVSDYVTKAGYGSES-EVDDEAATVSLASDVDKLNRASRKSAIRLQEIGPRM 301
Query: 379 NLHSSFVCAGGEEGKDMCTGD 441
LH V AG +C+GD
Sbjct: 302 KLHLVKVEAG------LCSGD 316
>07_03_1307 - 25649979-25650027,25650146-25650378
Length = 93
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 373 RYNLHSSFVCAGGEEGKDMCTGDGGG 450
R ++ S+ C+GGE+G GDGGG
Sbjct: 10 RRSVPSTAACSGGEQGGRAAAGDGGG 35
>06_03_0269 -
18991203-18991307,18991448-18991525,18992724-18992910,
18993096-18993265,18994228-18994306,18995006-18995220,
18995346-18995429,18995732-18995734
Length = 306
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 416 SSPPAQTKEL--CRLYLAPSSVYL 351
SSPP TKE RLYL PS +YL
Sbjct: 44 SSPPRMTKEWRSIRLYLVPSVIYL 67
>07_03_1519 +
27390204-27390590,27390591-27390809,27392516-27392962,
27393076-27393274,27393372-27393456,27393566-27393998
Length = 589
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/56 (26%), Positives = 19/56 (33%)
Frame = -1
Query: 448 HRHHPCTCLFPPPLXXXXRSYAGYTWRQARCT*VDHYNGYAPPYPVQSSLVLPQIH 281
H HHPCTC P + + D + + P P SS IH
Sbjct: 470 HWHHPCTCWCPHGCNRRHGTVTNIIYTHPDIILPDTSSSWLSPMPCLSSTATGTIH 525
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 376 YNLHSSFVCAGGEEGKDMCTGDGGG 450
YNL+S + GG + C G GGG
Sbjct: 170 YNLNSLYYRPGGAKNGGQCGGTGGG 194
>05_03_0090 - 8330283-8330831
Length = 182
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = -1
Query: 325 PPYPVQSSLVLPQIHHPYRNDSSPSRWRHSFYYHRRLRPRQASR*CLYAHLVLRATPNGG 146
PP + LP H P +PS R HRR+ P Q R HL +R G
Sbjct: 91 PPLSSRHLYPLPPRHRP-----APSLCRGDGLSHRRVSPLQGRRSAPVGHLAIRQADKVG 145
>03_05_0256 - 22438888-22439259
Length = 123
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +1
Query: 13 TINVRAGEWDTKIQMEPLRHQEMFLQKIYIHPGFNSRKLTNDIAFLHLALPLELDAHINT 192
T+ +WD + + Q+ +Q + GF + ++ FLH +L EL ++N+
Sbjct: 22 TVQAAYYDWDFDNGAKSIDIQDNSVQGCHRGFGFLAFHPFKEVVFLHYSLERELAYNLNS 81
Query: 193 ICLPDAGEV 219
+ D G +
Sbjct: 82 FKVQDLGNL 90
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 314 WIWWSIAVVMIYLGTPSLAPGITCIAPSSAPEGRREKTC 430
W+WW+ V+I + LA + CI GR K C
Sbjct: 103 WLWWTRFGVVITVLQFVLALCLLCIIVKDFSAGRSSKQC 141
>10_08_0136 -
15122420-15122469,15123845-15124334,15124822-15124935,
15125022-15125303,15125422-15125591,15125670-15125757,
15126128-15126173,15126254-15126336,15126595-15126694,
15127002-15127081,15127200-15127283,15127373-15127531,
15128617-15128772,15129634-15130197
Length = 821
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 273 TETILPPAVGDTVFTIIED 217
+E I PPA+ DT FT +ED
Sbjct: 204 SEPIKPPALDDTPFTHVED 222
>08_02_1310 - 26037025-26038074
Length = 349
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 349 LRYTELGARYNLHSSFVCAGGEEGKDMCTGDGGGPL 456
LRY +L A + S + AGG + +C GGG +
Sbjct: 11 LRYEDLAAGDFVRSDDIYAGGHTWRVLCYPRGGGAM 46
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 188 FICASSS--KGNAKWRKAMSFVSFLELKPG*M*IFCKNI 78
F C SS K N + +A SF F+EL G FC+ +
Sbjct: 115 FFCGDSSFAKSNQNFAEADSFFCFMELLSGFRDNFCQKL 153
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 49 IQMEPLRHQEMFLQKIYIHPGFNSRKLTNDIAFLHLALPLELDAHI 186
I M+P Q+ L Y+H G N + D+ ++ L L+A I
Sbjct: 721 IPMDPYALQQTLLGLEYLHKGCNPPIIHRDVKATNILLNTRLEAKI 766
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,256,845
Number of Sequences: 37544
Number of extensions: 347724
Number of successful extensions: 993
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -