Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P11
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17215.1 68417.m02589 expressed protein                             33   0.13 
At2g02870.1 68415.m00237 kelch repeat-containing F-box family pr...    29   1.2  
At5g16770.2 68418.m01964 myb family transcription factor (MYB9) ...    28   3.6  
At5g16770.1 68418.m01963 myb family transcription factor (MYB9) ...    28   3.6  
At4g18150.1 68417.m02697 hypothetical protein                          27   4.8  
At5g64813.1 68418.m08152 GTP-binding protein-related contains we...    27   8.4  

>At4g17215.1 68417.m02589 expressed protein
          Length = 150

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 248 LATQFLLSSKTSPASGKQIVFICASSSKGNAKWRKAMS 135
           L T  LLSS +SP  G  I F C +  +  +KW KA++
Sbjct: 44  LLTASLLSSSSSPIHGATIGFKCHTGHRRRSKWIKAVT 81


>At2g02870.1 68415.m00237 kelch repeat-containing F-box family
           protein weak similarity to Kelch-like protein 5
           (Swiss-Prot:Q96PQ7) [Homo sapiens]; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 467

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +1

Query: 217 VFDDSKNCVANGWGKNRFGKDDEFAVVLKKIELDMVEHSRCNDLLRYTELGARYNLHSS- 393
           VF  S+   +N      + +DD+  +   K  L++V   R    L+       Y+  SS 
Sbjct: 15  VFSSSRLSESNWSNSYMYPEDDDKLLGNGKRALEVVGEVRQTKSLKLMGFSIIYDSDSSD 74

Query: 394 FVCAGGEEGKDMCTGDG 444
           +  +GGEE  D   GDG
Sbjct: 75  YSLSGGEEQADAAIGDG 91


>At5g16770.2 68418.m01964 myb family transcription factor (MYB9)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 336

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 36  VGYKDPDGASPSSGD-VFTKDLHSPW 110
           V Y   D ++PSS +  FT+D H PW
Sbjct: 282 VDYHHHDASNPSSSNSTFTQDHHHPW 307


>At5g16770.1 68418.m01963 myb family transcription factor (MYB9)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 336

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 36  VGYKDPDGASPSSGD-VFTKDLHSPW 110
           V Y   D ++PSS +  FT+D H PW
Sbjct: 282 VDYHHHDASNPSSSNSTFTQDHHHPW 307


>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 343 HY--NGYAPPYPVQSSLVLPQIHHPYRNDSS 257
           HY  +GY  PY  Q+ + L  +HH Y+   +
Sbjct: 722 HYGGHGYVSPYHSQAVMSLEHLHHQYQQQQN 752


>At5g64813.1 68418.m08152 GTP-binding protein-related contains weak
           similarity to Ras-related protein Rab-27A (Rab-27)
           (GTP-binding protein Ram) (Swiss-Prot:P51159) [Homo
           sapiens]
          Length = 342

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 340 YNGYAPPYPVQSSLVLPQIHHPYRNDSSPSRW 245
           YN   PP P Q +L  P   +P +  S+P  +
Sbjct: 283 YNNTIPPLPAQRNLTPPPTLYPQQPVSTPDNY 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,589,778
Number of Sequences: 28952
Number of extensions: 255869
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)