Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P08
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 31 0.16
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.29
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 28 0.88
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 28 1.2
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 27 1.5
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 2.0
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 3.5
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 6.2
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 25 6.2
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 6.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 6.2
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 8.2
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 8.2
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 8.2
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe... 25 8.2
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 8.2
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 30.7 bits (66), Expect = 0.16
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 244 YYLHDYSLNAHYYYHHLT 297
+Y YSLN H +YHHLT
Sbjct: 258 WYSTSYSLNFHLFYHHLT 275
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 29.9 bits (64), Expect = 0.29
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 487 YDTCIQNCSLRLRRYH*VHRFHQIH*KVFPYSNV 386
YD+ I N S RRY V + QI K FPY N+
Sbjct: 59 YDSIILNDSGLERRYAFVQKLEQILKKEFPYKNI 92
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 28.3 bits (60), Expect = 0.88
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 172 ICKWKDSTRSCVIRELQSFGQYAKFHRY 89
+C+ DSTRSCVI + S Y+ Y
Sbjct: 366 VCECMDSTRSCVINDDVSSDDYSDLFSY 393
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 279 LLSSSDLQQVARRRCSSSIKRETWRMVLVRTQTTCNTLLYGK 404
L+ LQ AR C S + W+ ++ + T LLY K
Sbjct: 594 LVQRGSLQDRARIYCLSDDELSKWKTIIYKENLTAENLLYPK 635
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +3
Query: 195 VEYYCLALPLPKRFYVLLLT*LQFKCPLLLSSS----DLQQVARRRCSSSIKR 341
V Y C + K +Y +L + +CP++++S D++ VA S+ IKR
Sbjct: 124 VVYVCERKFIRKEYYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKR 176
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 43 GYAIPPIYEVLPEYFNNGEILHTAQRI 123
GY +PP+Y++ + + E+L +Q I
Sbjct: 666 GYVLPPVYKITQIHSGDTELLQLSQEI 692
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 3.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 172 ICKWKDSTRSCVIRELQSFGQYAKFHRY*NI--PVKPHILEE*RNLLSQNDEC 20
IC W T+S E + AK+HR+ +I V+ H E L S +D+C
Sbjct: 207 ICLWDVQTQSFTSSETKVISPIAKYHRHTDIVNDVQFHPQHE-ALLASVSDDC 258
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 111 CPKDWSSRITHDRVLSFHL 167
CPK WS I H R SF +
Sbjct: 501 CPKVWSKIINHPRFESFDI 519
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 148 EYYPSTYKWDNSVVIRSNTTVW 213
+ YP+ + W + +IRSN W
Sbjct: 205 QQYPAAFLWSLATLIRSNGIFW 226
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 546 QILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDVTTKF 433
Q+ W + V+M+ NW Y + ++ + F+ D T +
Sbjct: 709 QVYWRLGVQMVALNWQTYDTGLQINDAL-FIADPPTGY 745
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 6.2
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Frame = +1
Query: 67 EVLPEYFN--NGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNTTVWHYHCQSASM 240
EV+P FN N I +++ S ++D S + N+ C S+ +
Sbjct: 325 EVIPFSFNPYNDLIFSFKEKLYPLNSSPFNTLSDVPQFDVSEFVDENSFDSSSSC-SSKV 383
Query: 241 SYYLHDYSLNAHYYYHH--LTYNKWLGGDVVPLLKERRGEWYWF---VHKQLVTRYYMER 405
+ S+N+ H L+YN+ LG D+ + +R + Y F + +LV+ Y++
Sbjct: 384 FLTTRNNSINSEDSAHEVLLSYNRVLGSDIQGTILDRVKKGYQFDSQKNSELVSDLYLKD 443
Query: 406 L 408
L
Sbjct: 444 L 444
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 322 HRLLATCCKSDDDNNSGHLNCNHV 251
H L+ K+DDD ++ HL +H+
Sbjct: 800 HALMRYLGKTDDDEDNSHLLVHHI 823
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 564 YFFKFTQILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDV 445
Y F + L + V+ +R N W T +S ++A +DV
Sbjct: 337 YTFAMLEQLLELSVKTLRQNTCWSTSWEMLSSLLAIDFDV 376
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 8.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 399 HIVTCYKLFVYEPVP 355
H+++CYK +EP P
Sbjct: 594 HVLSCYKTLFFEPPP 608
>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 456 VYDVTTKFTDFTKSIRKSFHIVTCYKLFVY 367
++D TT F D + ++SF + C+ +F +
Sbjct: 92 MHDSTTIFKDVSSRQKRSFFKLACFAVFFF 121
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 226 QSASMSYYLHDYSLNAHYYYHHLTYNKWLG 315
Q+A + Y HD +L H Y H +N W+G
Sbjct: 336 QAAGIFY--HDLALRPHAYQH---FNTWMG 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,864
Number of Sequences: 5004
Number of extensions: 55060
Number of successful extensions: 167
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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