Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P06
         (549 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   0.76 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   0.76 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.0  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   5.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   5.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.4  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 134 SFSPHSHRADCGPWTIC 84
           SFS H+H  DC  + IC
Sbjct: 168 SFSRHAHPDDCRKYYIC 184


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 134 SFSPHSHRADCGPWTIC 84
           SFS H+H  DC  + IC
Sbjct: 168 SFSRHAHPDDCRKYYIC 184


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 408 FHHDAYCYANRNY 370
           FHHDA  Y  RNY
Sbjct: 191 FHHDAAGYGLRNY 203


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 368 YMTSVVTWMSRSCALTAFRYSMTTSMVF 285
           Y TS V+  + S +     Y  TTSMVF
Sbjct: 47  YNTSSVSNFNESSSSVFPNYIRTTSMVF 74


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 368 YMTSVVTWMSRSCALTAFRYSMTTSMVF 285
           Y TS V+  + S +     Y  TTSMVF
Sbjct: 47  YNTSSVSNFNESSSSVFPNYIRTTSMVF 74


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 243 NPNTRYARSLSTPNKYHGGSHTISKSSQSTGPT 341
           +PN +  R   +P+  +G S     S +  GPT
Sbjct: 148 SPNGKIGREDLSPSSLNGYSADSCDSKKKKGPT 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,729
Number of Sequences: 336
Number of extensions: 2666
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)