Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P06
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 1.4
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 27 2.4
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 3.2
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 4.2
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 5.6
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 5.6
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 7.3
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 7.3
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 7.3
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 255 RYARSLSTPN--KYHGGSHTISKSSQSTGPTHPGYNRRH 365
+Y +S T K H GS+ + + S HPG R H
Sbjct: 862 QYRKSCETQRSRKSHEGSNDLERQPSSPDTVHPGIKRSH 900
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 219 SIIDDIKLNPNTRYARSLSTPNKYH 293
S+ DD K N + Y RSLS +YH
Sbjct: 257 SMRDDKKRNHKSSYKRSLSPSTRYH 281
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 402 HDAYCYANRNYVHDVCCNLDESVLCFDCF*I*YDYLHGICLEYSNCE 262
HD +C+ + +Y HD+ LD +L D + + Y E S E
Sbjct: 231 HD-HCHVSSDYTHDIAHALDRDILERDEIVLQFPYTEAAAQEKSQEE 276
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +3
Query: 132 RSADDEPLWLFKDNNEP---RAPSTGDH 206
R D+ LW++ D NEP R P T H
Sbjct: 512 RFESDKNLWIWNDMNEPSVFRGPETSMH 539
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 84 TYRPRPTVGPVTMRAKRSADDEPLWLFKDNNEPRAPST 197
TY+ T+G + +S D P +FK+ N P APST
Sbjct: 461 TYQLAKTLGQQLIDNCKSVIDAPP-VFKNVNHPTAPST 497
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 376 SIRVAVSIMVEALRRLVVARTPAKLIQ 456
++RVA S+ V + R ARTP++L Q
Sbjct: 316 TVRVASSLAVRPVSRNAQARTPSRLEQ 342
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 189 PSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSS 323
P T H PS IK NP++ + R S + + T+ S+
Sbjct: 578 PDTESHSPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTLQISA 622
>SPMIT.03 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial||Partial|Manual
Length = 323
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 272 EYSKQIPWR*SYYI*KQSKHRTDSSRLQ 355
+Y + WR +Y I +++KH T+S Q
Sbjct: 284 KYISYLKWRKAYLIIQENKHLTESGLSQ 311
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 240 LNPNTRYARSLSTPNKYHGGSHTISKS 320
L P+ Y + +PNK SHT SK+
Sbjct: 454 LTPSKNYPSKIYSPNKNLDFSHTASKA 480
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +3
Query: 198 GDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTG 335
G H + S I +K + + + KY +H+I K + TG
Sbjct: 6 GTHNIKNSAIQLLKTKLKNEFLKGVKCITKYPENAHSIFKVQEYTG 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,907
Number of Sequences: 5004
Number of extensions: 42319
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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