Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P05
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 28 0.79
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 27 1.8
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.4
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 3.2
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 4.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 25 5.6
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 7.3
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 7.3
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 9.7
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 0.79
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 236 ENISKLKKLVHLAKYREHSSFLGFNCY-VGGLVSVVPQ 346
+N + LKKL H+ +Y E ++ L C+ +G + P+
Sbjct: 365 DNYALLKKLFHIVQYNEDNTSLAVACHDLGAYIRSYPE 402
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 89 ISWYLI*IQDSLSVEIVWCTSTRLLLKLEKRDF 187
+ W I IQ S++I+W +T++ L E+RDF
Sbjct: 54 LRWIAI-IQLRNSIDIIWRKNTKMSLLPEERDF 85
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 64 SNTNKKTCHFMVFDINTRFVIGGNSVVYFNKVAL 165
SNT +C+ ++ + R G +VYFNK+ +
Sbjct: 622 SNTLNSSCYVLLQWLKVRNFGGAKHIVYFNKLII 655
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 459 NGARGPTNGAIGTTN--VARGPTNEARGPTNV 370
NG+R P++G++ T + + GP + R P N+
Sbjct: 685 NGSRNPSHGSLNTAHAGMGYGPRSMMRDPQNL 716
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 4.2
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -2
Query: 531 PPYTRRSARS*GSIGPNNGARGLTNGARG-PTNGAIGTTNVARGPTNEARGPTNVPIGVS 355
PP S+ S P + N A P +GA T A PTN A G ++ I
Sbjct: 523 PPNLDTSSTFRSSASPPSAFTKAGNEALSVPLSGARNTA--ASRPTNLAAGNSSASIVQQ 580
Query: 354 LCSCGTTL 331
L CG T+
Sbjct: 581 LLECGGTM 588
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 519 RRSARS*GSIGPNNGARGLTNGARGPTNGAIGTTNVARG 403
R AR G G G RG GARG G+ G A+G
Sbjct: 32 RGGARG-GGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 70 TNKKTCHFMVFDINTRFVIGGNSVVYFNKVALKIREKGFLLHLLRKSFFVFFFL 231
T + T + + T ++ G + VYF+KVA E+ L + VFFF+
Sbjct: 662 TAENTSDHDIVGVATYNIVPGQAAVYFSKVACFCFEEQKLDAHEKVDLPVFFFI 715
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 70 TNKKTCHFMVFDINTRFVIGGNSVVYFNKVALKIREKGFLLHLLRKSFFVFFFL 231
T + T + + T ++ G + VYF+KVA E+ L + VFFF+
Sbjct: 662 TAENTSDHDIVGVATYNIVPGQAAVYFSKVACFCFEEQKLDAHEKVDLPVFFFI 715
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 367 DRRLPLLLRHDADEPTYVTVKAKK--*RVLSVF 275
D LPL+LR + YV +KAK+ R+L VF
Sbjct: 875 DTLLPLILRWIKEHNAYVKLKAKQLLDRMLRVF 907
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,358
Number of Sequences: 5004
Number of extensions: 36050
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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