Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P05
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0644 - 23107179-23107607,23107661-23107843                       29   2.4  
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875...    29   2.4  
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584...    29   3.2  
08_02_1220 - 25367388-25367401,25367689-25368034                       28   4.3  
02_01_0642 - 4803464-4805665,4806231-4806320                           28   4.3  
11_03_0087 - 9751791-9751926,9752852-9753063,9753285-9753347           27   9.9  
05_03_0426 + 13885400-13885434,13885961-13886336                       27   9.9  
04_04_1225 - 31865556-31865590,31865687-31865734,31866179-318662...    27   9.9  

>06_03_0644 - 23107179-23107607,23107661-23107843
          Length = 203

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +1

Query: 382 ASRLVGRASRNVGRAYRSVGRTSRSVGQASRPVVRAYRTSAPCRPTRIWRAAERR 546
           A R+ G  SR  G    +V      V  A+    R +R   PC  +RIW +  RR
Sbjct: 2   AGRIWGSGSRRRGMKVAAVDDAMWEV--AAGDAARRWRRPDPCGASRIWGSGSRR 54


>05_03_0475 +
           14486969-14487140,14487215-14487338,14487424-14487559,
           14487663-14488997
          Length = 588

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
 Frame = -2

Query: 549 RPALRRPPYTRRSARS*GSIGPNNGARGLTNGARGPTNGAIGTTNVAR-GPTNEARGPTN 373
           RP+L  P        + G+ G ++  R      + P     G  +VAR G T  A  P+ 
Sbjct: 262 RPSLTAPSSGALQRATPGAAGTSS-PRSTAPACQQPAATRRGANSVARSGSTPRAASPSP 320

Query: 372 VPIGVSLCSCGTTLTSPPT*QLKPRNEECS 283
               VS+ +  + +  PP    KPR    S
Sbjct: 321 RARDVSIAAGASRVAPPPMSSSKPRQAPAS 350


>07_03_1175 -
           24555965-24556117,24557809-24558264,24558270-24558436,
           24558468-24558756,24559620-24559726,24559841-24559909,
           24560001-24560109
          Length = 449

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 498 GSIGPNNGARGLTN-GARGPTNGAIGTTNVARG 403
           GS G NNG       GA G +NG   T+N +RG
Sbjct: 331 GSFGANNGGISSGQFGAVGHSNGGYSTSNFSRG 363


>08_02_1220 - 25367388-25367401,25367689-25368034
          Length = 119

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 424 AYRSVGRTSRSVGQASRPVVRAYRTSAPCRPTRIWRAAERR 546
           AYR +   SR  G A+R  V   R +A     R+ RAA RR
Sbjct: 6   AYRKLSPASRRGGGAARAWVALLRRAAAGVAARLQRAARRR 46


>02_01_0642 - 4803464-4805665,4806231-4806320
          Length = 763

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 373 VGRASRLVGRASRNVGRAYRSVGRTSRSVGQASRPVVRAYR 495
           + RA + + +  R + RAY       RS+G+ASR +V   R
Sbjct: 140 LNRAKKDLDQRERGINRAYARQQEMERSLGKASRDLVLQVR 180


>11_03_0087 - 9751791-9751926,9752852-9753063,9753285-9753347
          Length = 136

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 349 AEGDAYRYVGRASRLVGRASRNVGRAYRSVGRTSRSVGQAS 471
           A+  ++  V RAS      +R  GRAYR+ G   R   +AS
Sbjct: 6   AQESSHAVVYRASNSKRYTTRTFGRAYRNEGHKQRHEPEAS 46


>05_03_0426 + 13885400-13885434,13885961-13886336
          Length = 136

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 388 RLVGRASRNVGRAYRSVGRTSRSVGQASRPVVRAYRTSAPCRPTRIW 528
           R +G A          +GR   S G  +  V    +T+AP R   IW
Sbjct: 52  RCLGEAEATTAVERMGMGRVEESEGSGAVHVGEREKTAAPARAGHIW 98


>04_04_1225 -
           31865556-31865590,31865687-31865734,31866179-31866262,
           31866336-31866395,31866589-31866642,31866747-31867710
          Length = 414

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 462 TNGARGPTNGAIGTTNVARGPTNEARGP-TNVPIGVSLCSCGTTLTSPPT*QLKPRNEEC 286
           + G+ GP  G I      +GP N + GP  +V +  +  S  +  TS P      +++  
Sbjct: 75  SGGSFGPNIGTIQALPTKQGPANRSSGPRDSVNLVKTSLSQASIYTSAPLQGNSVKDDIV 134

Query: 285 SRYF 274
            +YF
Sbjct: 135 GKYF 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,479
Number of Sequences: 37544
Number of extensions: 223398
Number of successful extensions: 639
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)