Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P05
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001731-1|AAH01731.2| 709|Homo sapiens cell cycle associated p... 34 0.38
AY168880-1|AAO12531.1| 1781|Homo sapiens SPA-1-like 3 protein. 31 2.0
AB011117-1|BAA25471.2| 1368|Homo sapiens KIAA0545 protein protein. 31 2.0
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 31 2.7
AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein pr... 31 2.7
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 31 2.7
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 31 2.7
AB023146-1|BAA76773.1| 1663|Homo sapiens KIAA0929 protein protein. 31 2.7
X69943-1|CAA49561.1| 100|Homo sapiens GTP binding protein protein. 29 8.1
>BC001731-1|AAH01731.2| 709|Homo sapiens cell cycle associated
protein 1 protein.
Length = 709
Score = 33.9 bits (74), Expect = 0.38
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = -2
Query: 546 PALRRPPYTRRSARS*GSIGPNNGARGLTNGARGPTNGAIG 424
P +P Y R S G + GARGL NG RGP NG G
Sbjct: 598 PRSNQPYYNSRGV----SRGGSRGARGLMNGYRGPANGFRG 634
>AY168880-1|AAO12531.1| 1781|Homo sapiens SPA-1-like 3 protein.
Length = 1781
Score = 31.5 bits (68), Expect = 2.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 397 GRASRNVGRAYRSVGRTSRSVGQASRPVVRAYRTSA 504
G RNV + SVG S G + P + AYRT+A
Sbjct: 436 GECERNVSFSRASVGSPSSGEGHLAEPALSAYRTNA 471
>AB011117-1|BAA25471.2| 1368|Homo sapiens KIAA0545 protein protein.
Length = 1368
Score = 31.5 bits (68), Expect = 2.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 397 GRASRNVGRAYRSVGRTSRSVGQASRPVVRAYRTSA 504
G RNV + SVG S G + P + AYRT+A
Sbjct: 23 GECERNVSFSRASVGSPSSGEGHLAEPALSAYRTNA 58
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 31.1 bits (67), Expect = 2.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 489 GPNNGARGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCG 340
GP N G N P N +GT N A G N A N + G
Sbjct: 2695 GPVNVLTGPVNVLTTPVNATVGTVNAAPGTVNAAASAVNATASAVTVTAG 2744
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 471 RGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCGT 337
+ L + GP N G NV GP N P N +G + GT
Sbjct: 2680 KSLVSTPAGPVNVLKGPVNVLTGPVNVLTTPVNATVGTVNAAPGT 2724
Score = 29.5 bits (63), Expect = 8.1
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = -2
Query: 495 SIGPNNGARGLTNGA----RGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCGTTLT 328
S+ P N +G G+ + + G NV +GP N GP NV + GT
Sbjct: 2661 SLVPVNALKGPVKGSVTTLKSLVSTPAGPVNVLKGPVNVLTGPVNVLTTPVNATVGTVNA 2720
Query: 327 SPPT 316
+P T
Sbjct: 2721 APGT 2724
>AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein
protein.
Length = 3261
Score = 31.1 bits (67), Expect = 2.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 489 GPNNGARGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCG 340
GP N G N P N +GT N A G N A N + G
Sbjct: 2292 GPVNVLTGPVNVLTTPVNATVGTVNAAPGTVNAAASAVNATASAVTVTAG 2341
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 471 RGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCGT 337
+ L + GP N G NV GP N P N +G + GT
Sbjct: 2277 KSLVSTPAGPVNVLKGPVNVLTGPVNVLTTPVNATVGTVNAAPGT 2321
Score = 29.5 bits (63), Expect = 8.1
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = -2
Query: 495 SIGPNNGARGLTNGA----RGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCGTTLT 328
S+ P N +G G+ + + G NV +GP N GP NV + GT
Sbjct: 2258 SLVPVNALKGPVKGSVTTLKSLVSTPAGPVNVLKGPVNVLTGPVNVLTTPVNATVGTVNA 2317
Query: 327 SPPT 316
+P T
Sbjct: 2318 APGT 2321
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 31.1 bits (67), Expect = 2.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 489 GPNNGARGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCG 340
GP N G N P N +GT N A G N A N + G
Sbjct: 2695 GPVNVLTGPVNVLTTPVNATVGTVNAAPGTVNAAASAVNATASAVTVTAG 2744
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 471 RGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCGT 337
+ L + GP N G NV GP N P N +G + GT
Sbjct: 2680 KSLVSTPAGPVNVLKGPVNVLTGPVNVLTTPVNATVGTVNAAPGT 2724
Score = 29.5 bits (63), Expect = 8.1
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = -2
Query: 495 SIGPNNGARGLTNGA----RGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCGTTLT 328
S+ P N +G G+ + + G NV +GP N GP NV + GT
Sbjct: 2661 SLVPVNALKGPVKGSVTTLKSLVSTPAGPVNVLKGPVNVLTGPVNVLTTPVNATVGTVNA 2720
Query: 327 SPPT 316
+P T
Sbjct: 2721 APGT 2724
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 31.1 bits (67), Expect = 2.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 489 GPNNGARGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCG 340
GP N G N P N +GT N A G N A N + G
Sbjct: 2695 GPVNVLTGPVNVLTTPVNATVGTVNAAPGTVNAAASAVNATASAVTVTAG 2744
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 471 RGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCGT 337
+ L + GP N G NV GP N P N +G + GT
Sbjct: 2680 KSLVSTPAGPVNVLKGPVNVLTGPVNVLTTPVNATVGTVNAAPGT 2724
Score = 29.5 bits (63), Expect = 8.1
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = -2
Query: 495 SIGPNNGARGLTNGA----RGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCGTTLT 328
S+ P N +G G+ + + G NV +GP N GP NV + GT
Sbjct: 2661 SLVPVNALKGPVKGSVTTLKSLVSTPAGPVNVLKGPVNVLTGPVNVLTTPVNATVGTVNA 2720
Query: 327 SPPT 316
+P T
Sbjct: 2721 APGT 2724
>AB023146-1|BAA76773.1| 1663|Homo sapiens KIAA0929 protein protein.
Length = 1663
Score = 31.1 bits (67), Expect = 2.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 489 GPNNGARGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCG 340
GP N G N P N +GT N A G N A N + G
Sbjct: 694 GPVNVLTGPVNVLTTPVNATVGTVNAAPGTVNAAASAVNATASAVTVTAG 743
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 471 RGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCGT 337
+ L + GP N G NV GP N P N +G + GT
Sbjct: 679 KSLVSTPAGPVNVLKGPVNVLTGPVNVLTTPVNATVGTVNAAPGT 723
Score = 29.5 bits (63), Expect = 8.1
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = -2
Query: 495 SIGPNNGARGLTNGA----RGPTNGAIGTTNVARGPTNEARGPTNVPIGVSLCSCGTTLT 328
S+ P N +G G+ + + G NV +GP N GP NV + GT
Sbjct: 660 SLVPVNALKGPVKGSVTTLKSLVSTPAGPVNVLKGPVNVLTGPVNVLTTPVNATVGTVNA 719
Query: 327 SPPT 316
+P T
Sbjct: 720 APGT 723
>X69943-1|CAA49561.1| 100|Homo sapiens GTP binding protein protein.
Length = 100
Score = 29.5 bits (63), Expect = 8.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 400 DQRGERPDQRTDRRLPLLLRHDADE 326
D G P QR D RLPL +RH +E
Sbjct: 59 DVSGHEPRQRQDHRLPLHVRHRHEE 83
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,522,648
Number of Sequences: 237096
Number of extensions: 1275967
Number of successful extensions: 2842
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2814
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -