Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P05
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 30 0.95
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 30 0.95
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 30 0.95
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 30 1.3
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 30 1.3
AF038608-10|AAC25814.2| 327|Caenorhabditis elegans Serpentine r... 29 1.7
Z81486-9|CAB03991.1| 430|Caenorhabditis elegans Hypothetical pr... 28 3.9
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 28 3.9
AL161712-16|CAC35892.1| 329|Caenorhabditis elegans Hypothetical... 28 3.9
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 28 5.1
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 27 6.7
AF099925-17|AAO38624.1| 462|Caenorhabditis elegans Calcium bind... 27 8.9
AF099925-16|AAC69511.1| 482|Caenorhabditis elegans Calcium bind... 27 8.9
AF099925-15|AAC69510.2| 585|Caenorhabditis elegans Calcium bind... 27 8.9
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 27 8.9
AC024807-3|AAK84614.1| 252|Caenorhabditis elegans Hypothetical ... 27 8.9
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 486 PNNGARGLTNGARGPTNGAIGTTNVARGPTNEARGP 379
P G G T+G G +G G N NE RGP
Sbjct: 417 PREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGP 452
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 486 PNNGARGLTNGARGPTNGAIGTTNVARGPTNEARGP 379
P G G T+G G +G G N NE RGP
Sbjct: 417 PREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGP 452
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 486 PNNGARGLTNGARGPTNGAIGTTNVARGPTNEARGP 379
P G G T+G G +G G N NE RGP
Sbjct: 417 PREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGP 452
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 495 SIGPNNGARGLTNGARGPTNGAIGTTNVARGP 400
S GP GA G NGA+GP +G A+GP
Sbjct: 1060 SYGPAPGAHGYQNGAQGPPGAEVG----AQGP 1087
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 495 SIGPNNGARGLTNGARGPTNGAIGTTNVARGP 400
S GP GA G NGA+GP +G A+GP
Sbjct: 1080 SYGPAPGAHGYQNGAQGPPGAEVG----AQGP 1107
>AF038608-10|AAC25814.2| 327|Caenorhabditis elegans Serpentine
receptor, class z protein78 protein.
Length = 327
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 65 QILIKKHVISWYLI*IQDSLSVEIVWCTS-TRLLLKLEKRDFFYISLERVFLFF 223
Q L+ KH+ YL+ L++ I++CT+ + L +E F Y ++ V LF+
Sbjct: 151 QKLMAKHIWYLYLVCFIKELALAIIFCTTISTEFLGIEGNPFGYYTMGFVALFY 204
>Z81486-9|CAB03991.1| 430|Caenorhabditis elegans Hypothetical
protein C53A5.11 protein.
Length = 430
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 88 HFMVFDINTR-FVIGG-NSVVYFNKVALKIREKGFLLHLLR 204
H+ V +T+ F+IGG N+ Y N+V + +EKG + R
Sbjct: 203 HYAVVSSSTKVFIIGGMNNGTYLNRVEMFDKEKGIRVECTR 243
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = -2
Query: 546 PALRRPPYTRRSARS*GSIGPNNGARGLTNGARGPTNGAIGTTNVARGPTNEARGPTNVP 367
P + PP T S + GP + + PT+GA+ +T PTN++ P +P
Sbjct: 2195 PVTQAPPVTLPPP-SVATAGPTGPILTVVPVSSAPTSGAVSSTTNTPSPTNQS--PVTLP 2251
Query: 366 IGVSLCSCGTT 334
S+ + G T
Sbjct: 2252 -PPSVATAGPT 2261
>AL161712-16|CAC35892.1| 329|Caenorhabditis elegans Hypothetical
protein Y66D12A.21 protein.
Length = 329
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +2
Query: 128 VEIVWCTSTRLLLKLEKRDFFYISLERVFLFFFF*SENISKLKKLVHLAKYREHSSFLGF 307
+EI+ ++ KL K DF+ + ++++F +++K K+ L + FL
Sbjct: 176 LEIIVEKKMKISEKLNKNDFYVENSRKLYIFSGKFEFSVTKSSKIEFLGEKLNKKDFLNE 235
Query: 308 NC 313
NC
Sbjct: 236 NC 237
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 489 GPNNGARGLTNGARGPTNGAIGTTNVARGPTNEARGP 379
GP+ G G + +GP GA N +GP E+R P
Sbjct: 595 GPDFGPGGQGDRGQGPDFGARSQGNRGQGPAFESRQP 631
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 468 GLTNGARGPTNGAIGTTNVARGPTN 394
G TNGA G T G RGPT+
Sbjct: 546 GWTNGANGITRGQTRVPGTTRGPTH 570
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 468 GLTNGARGPTNGAIGTTNVARGPTN 394
G TNGA G T G RGPT+
Sbjct: 744 GWTNGANGITRGQTRVPGTTRGPTH 768
>AF099925-17|AAO38624.1| 462|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform c protein.
Length = 462
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 82 TCHFMVFDINTRFVIGGNSVVYFNKVALKIREKGFLLHLLRKSFF 216
T HF FD++ GN V F+++AL I +K + + K+FF
Sbjct: 404 TDHFKEFDLD------GNDAVTFDEIALLIEQKYGIPRSMIKTFF 442
>AF099925-16|AAC69511.1| 482|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform b protein.
Length = 482
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 82 TCHFMVFDINTRFVIGGNSVVYFNKVALKIREKGFLLHLLRKSFF 216
T HF FD++ GN V F+++AL I +K + + K+FF
Sbjct: 404 TDHFKEFDLD------GNDAVTFDEIALLIEQKYGIPRSMIKTFF 442
>AF099925-15|AAC69510.2| 585|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform a protein.
Length = 585
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 82 TCHFMVFDINTRFVIGGNSVVYFNKVALKIREKGFLLHLLRKSFF 216
T HF FD++ GN V F+++AL I +K + + K+FF
Sbjct: 404 TDHFKEFDLD------GNDAVTFDEIALLIEQKYGIPRSMIKTFF 442
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 82 TCHFMVFDINTRFVIGGNSVVYFNKVALKIREKGFLLHLLRKSFF 216
T HF FD++ GN V F+++AL I +K + + K+FF
Sbjct: 404 TDHFKEFDLD------GNDAVTFDEIALLIEQKYGIPRSMIKTFF 442
>AC024807-3|AAK84614.1| 252|Caenorhabditis elegans Hypothetical
protein Y53G8AL.3 protein.
Length = 252
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 147 VHHTISTDNESCIYIKYHEMTCFFISI*W 61
+ ++ STD C+ KY ++ F +I W
Sbjct: 204 LQNSCSTDTSDCLDFKYEDVNSIFFTICW 232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,034,344
Number of Sequences: 27780
Number of extensions: 210486
Number of successful extensions: 563
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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