Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P05
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16470.1 68417.m02494 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi...    29   2.7  
At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ...    27   6.2  
At5g44180.1 68418.m05406 homeobox transcription factor, putative...    27   6.2  
At1g52310.1 68414.m05902 protein kinase family protein / C-type ...    27   8.3  

>At4g16470.1 68417.m02494 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 459

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -2

Query: 150 EVHHTISTDNE----SCIYIKYHEMTCFFISI*WYLTTIDRS 37
           EVH  +  D        IY K HEMT FF+ I +Y   +D S
Sbjct: 415 EVHRFMKDDTSHRLSEKIYKKVHEMTSFFMDIDYYPDGLDSS 456


>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
           protein contains similarity to RNA binding protein PufA
           [Dictyostelium discoideum] gi|5106561|gb|AAD39751
          Length = 524

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 236 ENISKLKKLVHLAKYREHSSFLGFNCYVG 322
           +N+SK+      + +  HSSF G+ CY G
Sbjct: 67  QNLSKMSISDERSNFFNHSSFSGYGCYQG 95


>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
           (CCCH-type) family protein contains Pfam domain,
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
           similar), PF04677: Protein similar to CwfJ C-terminus 1,
           PF04676: Protein similar to CwfJ C-terminus 2
          Length = 593

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 435 GAIGTTNVARGPTNEARGPTNVPIGVSLCSCGTTLTSPPT*QLKPR 298
           G   T     G TN A   +++P+G+S  SC  +  S    ++KPR
Sbjct: 151 GGCITNEWPAGVTNRA-AVSDIPVGISDSSCSDSTVSELVMEVKPR 195


>At5g44180.1 68418.m05406 homeobox transcription factor, putative
            similar to homeobox transcription factor Hox7/homeotic
            protein Hox7 (GI:19486)   {Lycopersicon peruvianum};
            similar to GP|4165087| Williams-Beuren syndrome deletion
            transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
            domain and Pfam  PF00046: Homeobox domain
          Length = 1694

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 489  GPNNGARGLTNGARGPTNGAIGTTNVARG 403
            G  NG R  T G + PT G +G  N   G
Sbjct: 1516 GRKNGRRSGTKGRKRPTQGTLGICNEVGG 1544


>At1g52310.1 68414.m05902 protein kinase family protein / C-type
           lectin domain-containing protein contains protein kinase
           domain, Pfam:PF00069, PF00059 Lectin C-type domain
          Length = 552

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 336 TLTSPPT*QLKPRNEECSRYFARCTSFFNLEMF 238
           T++ PP   + P   +C  YF   TS+   EMF
Sbjct: 47  TVSCPPDWIIGPNQTKCYAYFKNSTSWEKSEMF 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,271,919
Number of Sequences: 28952
Number of extensions: 183411
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)