Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_P04
(572 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77270.1 68414.m08999 expressed protein 31 0.41
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 28 0.70
At3g14850.2 68416.m01876 expressed protein 29 2.2
At3g14850.1 68416.m01877 expressed protein 29 2.2
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f... 29 2.9
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 29 2.9
At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly ... 27 6.7
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit... 27 8.9
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR... 27 8.9
At3g48500.1 68416.m05294 expressed protein 27 8.9
At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1) i... 27 8.9
>At1g77270.1 68414.m08999 expressed protein
Length = 682
Score = 31.5 bits (68), Expect = 0.41
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 59 TRYISDRRCANIRRNSAAVVMRVRKKLKTGL-RIRRQDLPQPVPLVLREGQDAQRFENRE 235
TRY+ D + N R + + + R K+LKT + R + + P+V + +D QR +NRE
Sbjct: 390 TRYVRDSQEKNTRNDESQTIFRASKRLKTEIGRADHNSISKTNPVV--KTKDIQR-KNRE 446
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 27.9 bits (59), Expect(2) = 0.70
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = +3
Query: 288 PVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGV 467
PV G DG +C S S + G Q VK+ D+Q +C +++K G
Sbjct: 81 PVTGKDGGDSAEECLSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLK---GHTST 137
Query: 468 TYGNPCLLNCATQSNPSLSI 527
G + NC + S+S+
Sbjct: 138 ITG--VMYNCKDEHLASVSV 155
Score = 21.4 bits (43), Expect(2) = 0.70
Identities = 6/21 (28%), Positives = 12/21 (57%)
Frame = +3
Query: 243 TCEEADPCVCTFIYAPVCGTD 305
+ + DPCV ++ +P C +
Sbjct: 27 SADSGDPCVLSYTPSPGCAVN 47
>At3g14850.2 68416.m01876 expressed protein
Length = 321
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 462 GVTYGNPCLLNCATQSNPSLSIEHPGSCDNRVKVVE 569
GV +G P +C Q P L ++PG V V++
Sbjct: 223 GVLWGEPAAKSCVGQKEPLLGTKYPGGLPAEVGVLK 258
>At3g14850.1 68416.m01877 expressed protein
Length = 253
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 462 GVTYGNPCLLNCATQSNPSLSIEHPGSCDNRVKVVE 569
GV +G P +C Q P L ++PG V V++
Sbjct: 155 GVLWGEPAAKSCVGQKEPLLGTKYPGGLPAEVGVLK 190
>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 144
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 111 PSSCA--CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 251
P+SC C R PVCG D TY C D +++VK+G C+
Sbjct: 68 PASCPVQCFRP-DPVCGEDSVTYWCGC-----ADALCHGVRVVKQGACD 110
Score = 28.3 bits (60), Expect = 3.8
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 372 KHRGE-CQEVKVADIQPCICTREIKQVCGSDGVTYGNPCLLNCATQSNPSLSIEHPGSCD 548
K+RGE C+ + P C R VCG D VTY C CA + + G+CD
Sbjct: 56 KNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTYW--C--GCADALCHGVRVVKQGACD 110
>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 117
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 144 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 251
PVCG+DG TY C D ++VK+G C+
Sbjct: 53 PVCGTDGVTYWCGC-----PDAACHGARVVKKGACD 83
>At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly
identical to SP|P15455 [Plant Mol Biol 11:805-820
(1988)]; contains Pfam profile PF00190 Cupin and Prosite
11-S plant seed storage proteins signature PS00305
Length = 472
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 282 YAPVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVAD 410
YA G G +PN+C L+ L PS +K E ++V D
Sbjct: 21 YAAQQGQQGQQFPNECQLDQLNALEPSHVLK--SEAGRIEVWD 61
>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and
PF03931:Skp1 family, tetramerisation domain; identical
to cDNA UFO binding protein UIP2 mRNA, partial cds
GI:3719210
Length = 171
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 109 CRRHARAQET*DRSADQTARLTTTSAS 189
C+RH A E + +AD A TTT+ +
Sbjct: 60 CKRHVEAAEKSETTADAAAATTTTTVA 86
>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1253
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 463 PSLPQTCLISRVQIHGCISATLTSW 389
P+LPQ+ + + +HGC+S SW
Sbjct: 983 PALPQS--LKLLNVHGCVSLESVSW 1005
>At3g48500.1 68416.m05294 expressed protein
Length = 668
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 276 FIYAPVCGTDGNTYPNKCSLECSRPLAP 359
F + P+ DG+T P++ +C RP P
Sbjct: 354 FDFPPIFHRDGDTNPDEIRRDCGRPPEP 381
>At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1)
identical to GDP-mannose pyrophosphorylase from
Arabidopsis thaliana [GI:3598958]; updated per Conklin
PL et al, PNAS 1999, 96(7):4198-203
Length = 361
Score = 27.1 bits (57), Expect = 8.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 433 RVQIHGCISATLTSWHS 383
R++ H CIS+++ WHS
Sbjct: 297 RIKKHACISSSIIGWHS 313
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,255
Number of Sequences: 28952
Number of extensions: 269739
Number of successful extensions: 835
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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