Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P02
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.5  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   4.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.9  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPYTITT-AVSSVKAGHSIDVVISGKTPEDKMAGIL 273
           P  AP SA   +           P P T ++ + +SV +  S  + I  K       G++
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYDCEGVI 70

Query: 274 LEARQGDKIVGTWTVSPDDTFSQ 342
                     G W  SPD+ F Q
Sbjct: 71  RHH-------GQWNYSPDNHFEQ 86


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 477 IVKSYAVFWVGIESAPVKVLSH*IMSVIITYLMSTLICITN 599
           ++ S+  FW+   + P +V     + V     M+TL+  TN
Sbjct: 82  VIISWVSFWLNRNATPARV----ALGVTTVLTMTTLMSSTN 118


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 77  WRLPALTPPEHRLARAST*SQGTLLMFRQYQRLT 178
           W L +  PP ++++   T SQ    +++    LT
Sbjct: 324 WSLTSSPPPPYQISAQPTPSQSPNQIYQPVTNLT 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,308
Number of Sequences: 336
Number of extensions: 3474
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)