Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P02
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 30   1.6  
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.9  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)                27   8.8  
SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)                  27   8.8  
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              27   8.8  

>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +1

Query: 235 SGKTPEDKMAGILLEAR-QGDKIV---GTWTVSPDDTFSQPLNCGEPNNAVTHKMHWPRI 402
           SGKT  D   G+ L+A+ +G   +   G  T SP + F   L+  + N A  H    P  
Sbjct: 60  SGKTTRDGEYGVYLKAKCEGYTRIYCHGMNTDSPQE-FISLLSGSQRNYAYIHDYMQPEW 118

Query: 403 RRTDCFFTPG 432
            +T+C   PG
Sbjct: 119 NKTECSLIPG 128


>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 187 TAVSSVKAGHSIDVVISGKTPEDK 258
           T+V  +K G  I+VVIS K PED+
Sbjct: 72  TSVEQMKEGTVIEVVISAKVPEDE 95


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 126  RHDPRARC*CSDSTSALHHHYSCQLGKSWSFH*RGYQRQNTRRQNGRH 269
            RHD    C  S ++   +    C   + W     GY+RQ TR    +H
Sbjct: 1789 RHDKGVECLPSCTSDGSYEELQCIRDECWCVDKYGYERQATRMIGRKH 1836


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 316 RSKCRRSC-HPDELPGGCRPFC 254
           R++C R C +P+ +PG C P C
Sbjct: 250 RTECSRDCPNPEPIPGQCCPIC 271


>SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 372 GVIWFTTVE-GLREGIIGAYGPSADDLVTLTSFQEDA 265
           GV WF  ++  +R  I GA GP+ +     T   EDA
Sbjct: 285 GVSWFALLKVNIRSSIAGAGGPAMEAQTEFTKLLEDA 321


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 143  TLLMFRQYQRLTPSLQLSAR*KLVIPLTWLSAAKHPKTKWPASSW 277
            +LL  R  Q   P    S     V  + WL+ +  P++ WP S W
Sbjct: 1582 SLLEVRNSQNCDPIFVASVFVATVARVAWLTLSLWPRSLWPWSFW 1626


>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
          Length = 189

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 443 GLRRRRCVQGHHCQELRRLLGRNRISPRKGSKSLNH 550
           GL RR+C+Q    QE+R    +   S +  +++++H
Sbjct: 52  GLERRKCLQSFKSQEIRVFGSKGANSSKDETENIDH 87


>SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)
          Length = 346

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPE 252
           P G  P  C  + PG+  DV  +PA Y     +     G  + ++  G  P+
Sbjct: 274 PPGYGPDVCI-IPPGYGPDVYIIPADYGPDVCIIPPGYGPDVCIIPPGYGPD 324


>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +1

Query: 256 KMAGILL-EARQGDKIVGTWTV---SPDD-TFSQPLNCGEPNNAVT 378
           K+ GI L   ++G K+V +WTV   +P    F+ P   G+P+  +T
Sbjct: 625 KVKGIFLWHVKKGGKVVSSWTVDLKTPGGAVFTGPPKGGKPDTTIT 670


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,398,281
Number of Sequences: 59808
Number of extensions: 486546
Number of successful extensions: 1521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)