Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P02
         (600 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens ...    44   4e-04
BC071613-1|AAH71613.1|  392|Homo sapiens hypothetical protein LO...    31   4.1  
AK021919-1|BAB13937.1|  391|Homo sapiens protein ( Homo sapiens ...    31   4.1  
AK128824-1|BAC87625.1|  706|Homo sapiens protein ( Homo sapiens ...    30   5.4  

>AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16275 fis, clone NT2RI2027157, moderately
           similar to Mouse SDR2 mRNA. ).
          Length = 626

 Score = 44.0 bits (99), Expect = 4e-04
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPEDKMAGILL 276
           P G    +C  MIP H    Q+VP  + I  +  + + G  I+V +SG        G LL
Sbjct: 24  PNGKVTQSCHGMIPEHGHSPQSVPV-HDIYVSQMTFRPGDQIEVTLSG----HPFKGFLL 78

Query: 277 EARQGDKI----VGTWTVSPDDTFSQPLNCGE-PNNAVTHK 384
           EAR  + +    +G++T+  D   SQ L C +   +AV+H+
Sbjct: 79  EARNAEDLNGPPIGSFTLI-DSEVSQLLTCEDIQGSAVSHR 118



 Score = 31.1 bits (67), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 429 WTAPKDLEGDVVFKVTIVKSYAVFWVGI 512
           W AP        F VT+V+ Y ++WV I
Sbjct: 130 WNAPSSAPNHTQFLVTVVEKYKIYWVKI 157


>BC071613-1|AAH71613.1|  392|Homo sapiens hypothetical protein
           LOC339745 protein.
          Length = 392

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 391 WPRIRRTDC-FFTPGQLLRT*KATLCSRSPLSRA 489
           W   R TDC FF  GQ  +  K+ L +RSP+  A
Sbjct: 194 WENTRFTDCSFFVRGQEFKAHKSVLAARSPVFNA 227


>AK021919-1|BAB13937.1|  391|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11857 fis, clone HEMBA1006807, moderately
           similar to Homo sapiens mRNA for SPOP. ).
          Length = 391

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 391 WPRIRRTDC-FFTPGQLLRT*KATLCSRSPLSRA 489
           W   R TDC FF  GQ  +  K+ L +RSP+  A
Sbjct: 194 WENTRFTDCSFFVRGQEFKAHKSVLAARSPVFNA 227


>AK128824-1|BAC87625.1|  706|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46160 fis, clone TESTI4002141. ).
          Length = 706

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 319 LRSKCRRSCHPDELPGGCRPFCLRVFC 239
           LR+     C P +  GGC   C+RV C
Sbjct: 241 LRASVSECCVPGDAQGGCAGICVRVLC 267


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,737,139
Number of Sequences: 237096
Number of extensions: 2337664
Number of successful extensions: 7314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7310
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)