Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_P02
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52550.1 68418.m06525 expressed protein                             30   1.0  
At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family pro...    30   1.0  
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    29   1.8  
At5g10080.1 68418.m01168 aspartyl protease family protein contai...    29   3.1  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    27   7.2  
At5g24480.1 68418.m02885 hypothetical protein similar to unknown...    27   9.5  

>At5g52550.1 68418.m06525 expressed protein
          Length = 360

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -1

Query: 195 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHH 40
           + C D  R          PWD+   +    SGG++    H RC+ Y V +++
Sbjct: 250 EDCDDSYRNTLNQETGFKPWDYT-TKINLFSGGINRFFPHQRCSSYAVHDNN 300


>At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family
           protein similar to TRAF6-regulated IKK activator 1 beta
           Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 159

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = +1

Query: 322 PDDTFSQPLN--CGEPNNAVTHKMHWPRIRRTDCFFTPGQLLRT*KATLCSRSPLSRATP 495
           P   F   +N  C  P N V    H+P +      FT   LL   K  + S      A P
Sbjct: 79  PTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQP 138

Query: 496 SSGSESNQPP*RF*VIKSC 552
             G+E  +   +  V+K C
Sbjct: 139 LEGNEEGRTDPKGLVVKCC 157


>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 313 SKCRRSCHPDELPGG-CRPFCLRVFC 239
           + C   CH +  PGG CR F  R FC
Sbjct: 48  TNCENVCHNEGFPGGDCRGFRRRCFC 73


>At5g10080.1 68418.m01168 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 103 GAPPSACF-DMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTP 249
           G  PS C  D I    A   +  +P  + T     + GH++   I+GKTP
Sbjct: 447 GWSPSKCQEDKIEPPQASPGSTSSPNPLPTDEQQSRGGHAVSPAIAGKTP 496


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 350 LRGCEKV-SSGLTVQVPTILSP*RASRRMPAILSSGVLPL 234
           LR C ++ S+  +    T+LSP +  RR+P   SS + PL
Sbjct: 17  LRPCRQLHSTPKSTGDVTVLSPVKGRRRLPTCWSSSLFPL 56


>At5g24480.1 68418.m02885 hypothetical protein similar to unknown
           protein (gb|AAD32930.1)
          Length = 350

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 388 HWPRIRRTDCFFTPGQLLRT*KATLCSRSPLSRATPSSGSESNQP 522
           H+  I   DC  T  +  R+  ATL S  PLS +T    S + QP
Sbjct: 12  HFQSIHFFDCSLTSDRGQRSWPATLPSPQPLSASTFLKCSPTEQP 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,054,070
Number of Sequences: 28952
Number of extensions: 319755
Number of successful extensions: 797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)